miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 41776 0.66 0.40123
Target:  5'- cGAGGucgUGCCGaCGUGGGUCGCguucAUGCc -3'
miRNA:   3'- aCUUU---GCGGC-GCGCCCGGCGac--UGCG- -5'
28048 3' -60 NC_005887.1 + 27821 0.66 0.40123
Target:  5'- cGAcGCGCCGC-CGacGGCCGCgccUGCa -3'
miRNA:   3'- aCUuUGCGGCGcGC--CCGGCGacuGCG- -5'
28048 3' -60 NC_005887.1 + 26487 0.66 0.40123
Target:  5'- cUGguGCGCCugcugcGCGCGGGCguuucccucgauCGCgccGCGCa -3'
miRNA:   3'- -ACuuUGCGG------CGCGCCCG------------GCGac-UGCG- -5'
28048 3' -60 NC_005887.1 + 37942 0.66 0.392248
Target:  5'- aGGAuCGCCGCGCcu-UCGCcGGCGCg -3'
miRNA:   3'- aCUUuGCGGCGCGcccGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 11743 0.66 0.383397
Target:  5'- gGAcGCGCUGCGCGaGuuGCU--CGCg -3'
miRNA:   3'- aCUuUGCGGCGCGCcCggCGAcuGCG- -5'
28048 3' -60 NC_005887.1 + 40864 0.66 0.383397
Target:  5'- cGAAGcCGCCGCGCGcGUCGaaGAagaaaCGCg -3'
miRNA:   3'- aCUUU-GCGGCGCGCcCGGCgaCU-----GCG- -5'
28048 3' -60 NC_005887.1 + 1838 0.66 0.383397
Target:  5'- ---cGCGCCGCGUGGuggauGCCGaacacGACGUc -3'
miRNA:   3'- acuuUGCGGCGCGCC-----CGGCga---CUGCG- -5'
28048 3' -60 NC_005887.1 + 13969 0.66 0.383397
Target:  5'- gUGAcGACaGCCGCGaa-GCCGUcGACGCg -3'
miRNA:   3'- -ACU-UUG-CGGCGCgccCGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 9891 0.67 0.374681
Target:  5'- cGAuccgcACGCCGCGCaGuGGCUGCgcaaccUGAuCGCc -3'
miRNA:   3'- aCUu----UGCGGCGCG-C-CCGGCG------ACU-GCG- -5'
28048 3' -60 NC_005887.1 + 9197 0.67 0.374681
Target:  5'- cGAAGCaCCGcCGCGgcacggucGGCUGCUucuaccGACGCa -3'
miRNA:   3'- aCUUUGcGGC-GCGC--------CCGGCGA------CUGCG- -5'
28048 3' -60 NC_005887.1 + 41281 0.67 0.374681
Target:  5'- cGAccuGCGCaCGgGCGcGCUGCUGcCGCc -3'
miRNA:   3'- aCUu--UGCG-GCgCGCcCGGCGACuGCG- -5'
28048 3' -60 NC_005887.1 + 15077 0.67 0.374681
Target:  5'- aUGGAAgucgUGCCGaucauuggcgaCGCGGGCCgGCgcgcGAUGCa -3'
miRNA:   3'- -ACUUU----GCGGC-----------GCGCCCGG-CGa---CUGCG- -5'
28048 3' -60 NC_005887.1 + 13406 0.67 0.374681
Target:  5'- -cGGACGUCG-GCGGcaagccGCUGCUGACGa -3'
miRNA:   3'- acUUUGCGGCgCGCC------CGGCGACUGCg -5'
28048 3' -60 NC_005887.1 + 5935 0.67 0.374681
Target:  5'- cGGugUGUCGgGCGaGGUgaucgauaagcuCGCUGGCGCg -3'
miRNA:   3'- aCUuuGCGGCgCGC-CCG------------GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 26206 0.67 0.374681
Target:  5'- cGggGCGgCGgugGCcGGCCugcaGCUGGCGCa -3'
miRNA:   3'- aCuuUGCgGCg--CGcCCGG----CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 21650 0.67 0.373816
Target:  5'- --cGACGCCGaccaaucUGaCGGGCguguCGCUGACGUc -3'
miRNA:   3'- acuUUGCGGC-------GC-GCCCG----GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 41461 0.67 0.372092
Target:  5'- cGgcACGCCGCGCGaGGaucugcucaucaucCCGCaUGGCa- -3'
miRNA:   3'- aCuuUGCGGCGCGC-CC--------------GGCG-ACUGcg -5'
28048 3' -60 NC_005887.1 + 4241 0.67 0.366099
Target:  5'- ---cGCGCCGaCGCucGGCCGC--ACGCa -3'
miRNA:   3'- acuuUGCGGC-GCGc-CCGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 16105 0.67 0.366099
Target:  5'- gUGAAACGCUuuccggugGCGCuGcGCCGC--GCGCa -3'
miRNA:   3'- -ACUUUGCGG--------CGCGcC-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 31131 0.67 0.366099
Target:  5'- cGAGcuUGCCGgGCaGGCCGU--GCGCa -3'
miRNA:   3'- aCUUu-GCGGCgCGcCCGGCGacUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.