miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 16105 0.67 0.366099
Target:  5'- gUGAAACGCUuuccggugGCGCuGcGCCGC--GCGCa -3'
miRNA:   3'- -ACUUUGCGG--------CGCGcC-CGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 15383 0.67 0.366099
Target:  5'- aGGucGACGCCgcgcugaucgcGCGCGGGCaGCggaucgucgacGACGCa -3'
miRNA:   3'- aCU--UUGCGG-----------CGCGCCCGgCGa----------CUGCG- -5'
28048 3' -60 NC_005887.1 + 6311 0.67 0.366099
Target:  5'- cGAGgccuuGCGCCuCGcCGGcGCCGaggUGACGCu -3'
miRNA:   3'- aCUU-----UGCGGcGC-GCC-CGGCg--ACUGCG- -5'
28048 3' -60 NC_005887.1 + 23775 0.67 0.361015
Target:  5'- cUGGAACGCCGCGaCGaGCaugucgcccgcgaaGCcGGCGCc -3'
miRNA:   3'- -ACUUUGCGGCGC-GCcCGg-------------CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 24453 0.67 0.357654
Target:  5'- gGAcACGCaGCauCaGGCCGUUGGCGCg -3'
miRNA:   3'- aCUuUGCGgCGc-GcCCGGCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 29779 0.67 0.352652
Target:  5'- aGGAuCGCCGCGUcgcgcagcucGGGCCaguaGCUGgaagucugcggguguGCGCg -3'
miRNA:   3'- aCUUuGCGGCGCG----------CCCGG----CGAC---------------UGCG- -5'
28048 3' -60 NC_005887.1 + 23980 0.67 0.349346
Target:  5'- -cGAGCGCCG-GCGcGCCGUcuACGCg -3'
miRNA:   3'- acUUUGCGGCgCGCcCGGCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 16235 0.67 0.349346
Target:  5'- cGAuACGCCggccggcgaGCGCacGGGCaccgucgccgaGCUGAUGCa -3'
miRNA:   3'- aCUuUGCGG---------CGCG--CCCGg----------CGACUGCG- -5'
28048 3' -60 NC_005887.1 + 14620 0.67 0.349346
Target:  5'- --cGGCGCCGuCGaGGGCgCGCUcacggcagccGGCGCg -3'
miRNA:   3'- acuUUGCGGC-GCgCCCG-GCGA----------CUGCG- -5'
28048 3' -60 NC_005887.1 + 6826 0.67 0.349346
Target:  5'- cGcuACGUgGCGCGGGuCUGCaacaucGACGUg -3'
miRNA:   3'- aCuuUGCGgCGCGCCC-GGCGa-----CUGCG- -5'
28048 3' -60 NC_005887.1 + 4068 0.67 0.349346
Target:  5'- gUGAAGcCGCUGCucaCGGGCaaGCaGGCGCa -3'
miRNA:   3'- -ACUUU-GCGGCGc--GCCCGg-CGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 1229 0.67 0.341177
Target:  5'- cUGGcgGGCGCUGCGCGGcGCUcaGC--ACGCg -3'
miRNA:   3'- -ACU--UUGCGGCGCGCC-CGG--CGacUGCG- -5'
28048 3' -60 NC_005887.1 + 33889 0.67 0.341177
Target:  5'- -cGAGCgGuuGCGcCGGGCgcucgaucgCGUUGACGCg -3'
miRNA:   3'- acUUUG-CggCGC-GCCCG---------GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 11583 0.67 0.341177
Target:  5'- aGGAAcuCGCCGCGCGcacGGUCgaGCUGAC-Cg -3'
miRNA:   3'- aCUUU--GCGGCGCGC---CCGG--CGACUGcG- -5'
28048 3' -60 NC_005887.1 + 17530 0.67 0.341177
Target:  5'- cGAAGCGCUuuGCGCaGGacaucgagaaGCCGCUGuCGg -3'
miRNA:   3'- aCUUUGCGG--CGCG-CC----------CGGCGACuGCg -5'
28048 3' -60 NC_005887.1 + 30967 0.67 0.341177
Target:  5'- ----cCGCCaGCGCuccGGCugCGCUGACGCc -3'
miRNA:   3'- acuuuGCGG-CGCGc--CCG--GCGACUGCG- -5'
28048 3' -60 NC_005887.1 + 41353 0.67 0.338753
Target:  5'- cGAuccgcGCGCCGC-CGGGaaGCUGuucgagcagaccguGCGCg -3'
miRNA:   3'- aCUu----UGCGGCGcGCCCggCGAC--------------UGCG- -5'
28048 3' -60 NC_005887.1 + 39641 0.67 0.333146
Target:  5'- cGu--CGUCGCGCGgcucGGCCGCUuGcCGCc -3'
miRNA:   3'- aCuuuGCGGCGCGC----CCGGCGA-CuGCG- -5'
28048 3' -60 NC_005887.1 + 9084 0.67 0.333146
Target:  5'- gUGAGggugcAUGCCaGCGCGGGCa-CcGGCGCc -3'
miRNA:   3'- -ACUU-----UGCGG-CGCGCCCGgcGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 9290 0.67 0.332351
Target:  5'- gGcGACGCCGCagguuaCGGGCaccgaaaCGCcGACGCa -3'
miRNA:   3'- aCuUUGCGGCGc-----GCCCG-------GCGaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.