Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28048 | 5' | -56.7 | NC_005887.1 | + | 12685 | 0.67 | 0.473545 |
|
Target: 5'- aAGCGCCAgCUGUGCUACcucGCGCCg- -3' miRNA: 3'- cUCGUGGU-GGUACGGUGua-UGCGGga -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 11220 | 0.66 | 0.537538 |
|
Target: 5'- -cGCACgGCC-UGCCcgGCAagcuCGCCCUg -3' miRNA: 3'- cuCGUGgUGGuACGG--UGUau--GCGGGA- -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 9923 | 0.68 | 0.385446 |
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Target: 5'- uGAuCGCCGCCG-GCCACAU-CGCCg- -3' miRNA: 3'- -CUcGUGGUGGUaCGGUGUAuGCGGga -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 8657 | 0.67 | 0.453065 |
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Target: 5'- -cGCGCCAcgaaaaaccaauCCGgaGCCugAUAUGCCCg -3' miRNA: 3'- cuCGUGGU------------GGUa-CGGugUAUGCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 8483 | 0.73 | 0.202432 |
|
Target: 5'- gGAGCGCUGUCGgcUGCCGCAggcucgUACGCCCUg -3' miRNA: 3'- -CUCGUGGUGGU--ACGGUGU------AUGCGGGA- -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 4170 | 0.68 | 0.41361 |
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Target: 5'- uGAGC-CgGCCAUGCUGCAcacCGCCUa -3' miRNA: 3'- -CUCGuGgUGGUACGGUGUau-GCGGGa -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 2338 | 0.68 | 0.394692 |
|
Target: 5'- -cGCGCCAUgAUGCgCACcgcgACGUCCUg -3' miRNA: 3'- cuCGUGGUGgUACG-GUGua--UGCGGGA- -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 1812 | 0.67 | 0.47251 |
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Target: 5'- cGAGCGCCagACCGucgucgcUGCCGC--GCGCCg- -3' miRNA: 3'- -CUCGUGG--UGGU-------ACGGUGuaUGCGGga -5' |
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| 28048 | 5' | -56.7 | NC_005887.1 | + | 513 | 0.7 | 0.286072 |
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Target: 5'- aGGCGCCGCCAgaUCGCGUGgucguCGCCCUu -3' miRNA: 3'- cUCGUGGUGGUacGGUGUAU-----GCGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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