miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28049 3' -52.9 NC_005887.1 + 1263 0.67 0.70691
Target:  5'- gUUCcUCUGCCUcGUCcacgaGCGCGCGg -3'
miRNA:   3'- aAAGuAGAUGGGcUAGuag--CGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 1372 0.66 0.740138
Target:  5'- --aCAUCcuguCCCGcgCGUCGCGCuCGu -3'
miRNA:   3'- aaaGUAGau--GGGCuaGUAGCGCGcGC- -5'
28049 3' -52.9 NC_005887.1 + 1420 0.66 0.750995
Target:  5'- -cUCGgcgUugCCGAacUCGgugCGCGCGCGg -3'
miRNA:   3'- aaAGUag-AugGGCU--AGUa--GCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 4264 0.79 0.162725
Target:  5'- ---aGUCUgaacugcucgGCCCGAUgAUCGCGCGCGa -3'
miRNA:   3'- aaagUAGA----------UGGGCUAgUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 5145 0.69 0.581451
Target:  5'- --gCG-CUGCCCGA-CGUCGgCGCGCc -3'
miRNA:   3'- aaaGUaGAUGGGCUaGUAGC-GCGCGc -5'
28049 3' -52.9 NC_005887.1 + 6915 0.7 0.525381
Target:  5'- -gUCAUCUacgcgucgcucgACCUGAUCGacUCGUGgGCGa -3'
miRNA:   3'- aaAGUAGA------------UGGGCUAGU--AGCGCgCGC- -5'
28049 3' -52.9 NC_005887.1 + 8197 0.69 0.592838
Target:  5'- gUUCGaugUCUACCCGcgCAcCGacaCGCGCGg -3'
miRNA:   3'- aAAGU---AGAUGGGCuaGUaGC---GCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 8972 0.67 0.70691
Target:  5'- -cUCAUcCUGCCCGccgg-CGCGUGCa -3'
miRNA:   3'- aaAGUA-GAUGGGCuaguaGCGCGCGc -5'
28049 3' -52.9 NC_005887.1 + 10845 0.68 0.604261
Target:  5'- --gCGUUcAUCCGcgCcgCGCGCGCGg -3'
miRNA:   3'- aaaGUAGaUGGGCuaGuaGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 12052 0.66 0.76172
Target:  5'- -gUgAUCgGCCUGAcugcgaaCGUCGUGCGCGg -3'
miRNA:   3'- aaAgUAGaUGGGCUa------GUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 12416 0.71 0.450707
Target:  5'- --cCGUCgauCCCGAg-AUCGUGCGCGa -3'
miRNA:   3'- aaaGUAGau-GGGCUagUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 14538 0.66 0.729163
Target:  5'- --cCGUCggcgGCgcgUCGAUCggcauGUCGCGCGCGg -3'
miRNA:   3'- aaaGUAGa---UG---GGCUAG-----UAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 16169 1.07 0.001552
Target:  5'- uUUUCAUCUACCCGAUCAUCGCGCGCGa -3'
miRNA:   3'- -AAAGUAGAUGGGCUAGUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 17595 0.67 0.672966
Target:  5'- --cCGUCaauCCCGcgC-UCGCGCGCa -3'
miRNA:   3'- aaaGUAGau-GGGCuaGuAGCGCGCGc -5'
28049 3' -52.9 NC_005887.1 + 19446 0.68 0.646668
Target:  5'- cUUCAUCUgcGCCUGAUagaugcgccaccaGCGCGCGa -3'
miRNA:   3'- aAAGUAGA--UGGGCUAguag---------CGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 25439 0.66 0.750995
Target:  5'- -gUCGUCUugCCGAUCugcUCG-GCuGCa -3'
miRNA:   3'- aaAGUAGAugGGCUAGu--AGCgCG-CGc -5'
28049 3' -52.9 NC_005887.1 + 25574 0.71 0.450707
Target:  5'- ----uUCUGCCCGAccuUCAUCGCGUcgaucGCGc -3'
miRNA:   3'- aaaguAGAUGGGCU---AGUAGCGCG-----CGC- -5'
28049 3' -52.9 NC_005887.1 + 26160 0.66 0.740138
Target:  5'- --aCGUCcucgUCGAUCguGUCGCGCGCGa -3'
miRNA:   3'- aaaGUAGaug-GGCUAG--UAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 26890 0.69 0.57011
Target:  5'- --gCGUCUugguGCgCGGUCAUCGCG-GCGa -3'
miRNA:   3'- aaaGUAGA----UGgGCUAGUAGCGCgCGC- -5'
28049 3' -52.9 NC_005887.1 + 26955 0.68 0.650106
Target:  5'- -aUCcgCUGCCCGcgCG-CGaucaGCGCGg -3'
miRNA:   3'- aaAGuaGAUGGGCuaGUaGCg---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.