Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28049 | 3' | -52.9 | NC_005887.1 | + | 41201 | 0.68 | 0.627174 |
Target: 5'- --gCAUCcgACCCGcgCGUCGuCGUGCc -3' miRNA: 3'- aaaGUAGa-UGGGCuaGUAGC-GCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 40356 | 0.68 | 0.661551 |
Target: 5'- --cCGUCgagcgcgGCCgugcCGcUCGUCGCGCGCGa -3' miRNA: 3'- aaaGUAGa------UGG----GCuAGUAGCGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 40154 | 0.68 | 0.661551 |
Target: 5'- -aUCGguuugcgCUGCCCGAUCAcCGCG-GCc -3' miRNA: 3'- aaAGUa------GAUGGGCUAGUaGCGCgCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 39778 | 0.72 | 0.40109 |
Target: 5'- -gUCGcggcgCUcGCgCCGAUCGUUGCGCGCGu -3' miRNA: 3'- aaAGUa----GA-UG-GGCUAGUAGCGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 39181 | 0.67 | 0.684339 |
Target: 5'- --gCAgCUGCCCGAacUUGUCGagGCGCGg -3' miRNA: 3'- aaaGUaGAUGGGCU--AGUAGCg-CGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 38869 | 0.77 | 0.215397 |
Target: 5'- --aCGUCgUGCUCGAUCAUCaGCGCGCc -3' miRNA: 3'- aaaGUAG-AUGGGCUAGUAG-CGCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 38201 | 0.72 | 0.382239 |
Target: 5'- -cUCAa-UACCCGAgccaGUCGCGCGCa -3' miRNA: 3'- aaAGUagAUGGGCUag--UAGCGCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 37763 | 0.66 | 0.76172 |
Target: 5'- --cCAaCUugCCG-UCGUCGuUGCGCGg -3' miRNA: 3'- aaaGUaGAugGGCuAGUAGC-GCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 37479 | 0.66 | 0.740138 |
Target: 5'- -aUCGUCgcgAgCgGAUCgAUCGUGCGCu -3' miRNA: 3'- aaAGUAGa--UgGgCUAG-UAGCGCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 36703 | 0.66 | 0.740138 |
Target: 5'- --cCAUCUGCuuCCGcgucacGUCGUCGuCGUGCGa -3' miRNA: 3'- aaaGUAGAUG--GGC------UAGUAGC-GCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 36148 | 0.68 | 0.604261 |
Target: 5'- -aUCGUCUcGCCgGuuuccUCGUCGCGgCGCGu -3' miRNA: 3'- aaAGUAGA-UGGgCu----AGUAGCGC-GCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 35467 | 0.69 | 0.57011 |
Target: 5'- -aUCAUgUACuuGAUCAgCGCcuGCGCGu -3' miRNA: 3'- aaAGUAgAUGggCUAGUaGCG--CGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 34554 | 0.69 | 0.544249 |
Target: 5'- cUUCGUCUGCgcguagaugUCGAUCGUCGCGUucacguagcagccgGCGu -3' miRNA: 3'- aAAGUAGAUG---------GGCUAGUAGCGCG--------------CGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 33722 | 0.68 | 0.61571 |
Target: 5'- -gUCgAUCUGCUCGAUCGcggcgaggaUCaGCGCGCc -3' miRNA: 3'- aaAG-UAGAUGGGCUAGU---------AG-CGCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 31488 | 0.66 | 0.740138 |
Target: 5'- gUUCGUagucaCCGAUUgccgCGCGCGCGg -3' miRNA: 3'- aAAGUAgaug-GGCUAGua--GCGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 30195 | 0.67 | 0.672966 |
Target: 5'- --aCGUC-ACgCGAUCGUCaccaaucugGCGCGCGa -3' miRNA: 3'- aaaGUAGaUGgGCUAGUAG---------CGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 29920 | 0.67 | 0.70691 |
Target: 5'- ---gGUCcAUCgCGAUCGcgCGCGCGCGg -3' miRNA: 3'- aaagUAGaUGG-GCUAGUa-GCGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 28279 | 0.66 | 0.750995 |
Target: 5'- -aUCAUCggcACgCCGAg---CGCGCGCa -3' miRNA: 3'- aaAGUAGa--UG-GGCUaguaGCGCGCGc -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 27911 | 0.7 | 0.536452 |
Target: 5'- ---gGUCUGgUCGAUCgcgGUUGCGCGCGu -3' miRNA: 3'- aaagUAGAUgGGCUAG---UAGCGCGCGC- -5' |
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28049 | 3' | -52.9 | NC_005887.1 | + | 27618 | 0.68 | 0.604261 |
Target: 5'- -aUCG-CUuuCUCGAUCGUCGCcuGCGCGa -3' miRNA: 3'- aaAGUaGAu-GGGCUAGUAGCG--CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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