miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28049 5' -59.1 NC_005887.1 + 27586 0.72 0.206823
Target:  5'- cGGCGAGGugGUCGUaacccGCGuuGCGc -3'
miRNA:   3'- -CUGCUCCugCAGCAgcu--CGCggCGCu -5'
28049 5' -59.1 NC_005887.1 + 27588 0.75 0.12085
Target:  5'- cGCGAGcGCGcCGUCGAGCGUCGUGu -3'
miRNA:   3'- cUGCUCcUGCaGCAGCUCGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 29946 0.78 0.079573
Target:  5'- -uCGGGaucGACGgUGUCGAGCGCCGCGAa -3'
miRNA:   3'- cuGCUC---CUGCaGCAGCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 32289 0.69 0.294968
Target:  5'- cACG-GGGCGaUCGUCGGgccagccggcGCGCCGCa- -3'
miRNA:   3'- cUGCuCCUGC-AGCAGCU----------CGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 34316 0.66 0.476648
Target:  5'- -uCGAGcACGUCGUCguacaucgaguuGAGCguaGCCGCGGc -3'
miRNA:   3'- cuGCUCcUGCAGCAG------------CUCG---CGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 34699 0.67 0.391732
Target:  5'- aGCGGGcGGCcGUCGUCGcgcuugcgguGCGCgGCGAu -3'
miRNA:   3'- cUGCUC-CUG-CAGCAGCu---------CGCGgCGCU- -5'
28049 5' -59.1 NC_005887.1 + 35056 0.68 0.365693
Target:  5'- cGCGAGGucgcugcCGUCGUCG-GCgGgCGCGAc -3'
miRNA:   3'- cUGCUCCu------GCAGCAGCuCG-CgGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 35732 0.68 0.34901
Target:  5'- -cCGAGG-CGUUGUCGgauccGGUGCCGCc- -3'
miRNA:   3'- cuGCUCCuGCAGCAGC-----UCGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 36920 0.66 0.475653
Target:  5'- aGCGGGcGCGUgGUCGcgccggucgcugcGGCGCCGCc- -3'
miRNA:   3'- cUGCUCcUGCAgCAGC-------------UCGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 38060 0.69 0.325017
Target:  5'- cGGCGAGGAUGUCGacCucGCG-CGCGAu -3'
miRNA:   3'- -CUGCUCCUGCAGCa-GcuCGCgGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 38391 0.66 0.476648
Target:  5'- cGCGAGcaacGGCGg-GUCGAcgagcuucugcGCGCCGCGGa -3'
miRNA:   3'- cUGCUC----CUGCagCAGCU-----------CGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 39399 0.76 0.111251
Target:  5'- cGGCGAGGAUgGUCG-CGgcGGUGCCGCGGc -3'
miRNA:   3'- -CUGCUCCUG-CAGCaGC--UCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 40750 0.67 0.400675
Target:  5'- -uCGAGGcgauCGcCGUUGGcGCGCCGCGc -3'
miRNA:   3'- cuGCUCCu---GCaGCAGCU-CGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 41091 0.66 0.447281
Target:  5'- aGGCGGGuagcuaugcGACGUuuucgCGUgcUGAGCGCCGCGc -3'
miRNA:   3'- -CUGCUC---------CUGCA-----GCA--GCUCGCGGCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.