Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28049 | 5' | -59.1 | NC_005887.1 | + | 1810 | 0.68 | 0.374239 |
Target: 5'- cGCGAGcgccaGAcCGUCGUCGcugccgcGCGCCGCGu -3' miRNA: 3'- cUGCUC-----CU-GCAGCAGCu------CGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2415 | 0.69 | 0.325017 |
Target: 5'- cGCGAuGcGCGUCGUCGAcGCGCC-CGGc -3' miRNA: 3'- cUGCU-CcUGCAGCAGCU-CGCGGcGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2554 | 0.71 | 0.22299 |
Target: 5'- uGCGaAGuGACGacgcgcgcaacgaUCGgcgCGAGCGCCGCGAc -3' miRNA: 3'- cUGC-UC-CUGC-------------AGCa--GCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2640 | 0.66 | 0.476648 |
Target: 5'- gGAUGAGGugG-CGgCGGGCaCuCGCGAu -3' miRNA: 3'- -CUGCUCCugCaGCaGCUCGcG-GCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2893 | 0.74 | 0.142395 |
Target: 5'- cGACGAcGGACa-CGUCGGcCGCCGCGAa -3' miRNA: 3'- -CUGCU-CCUGcaGCAGCUcGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 6155 | 0.68 | 0.365693 |
Target: 5'- cGACGAuggcGGAUGUCGcCaAGCGCCuCGAc -3' miRNA: 3'- -CUGCU----CCUGCAGCaGcUCGCGGcGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 6552 | 0.66 | 0.455987 |
Target: 5'- cACGGGGcugucgccGCGcuacaacUCGUUGAGCGCCGaGAa -3' miRNA: 3'- cUGCUCC--------UGC-------AGCAGCUCGCGGCgCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 9606 | 0.68 | 0.382919 |
Target: 5'- cGCGccGGCG-CGcacgCGAGCGCCGCGc -3' miRNA: 3'- cUGCucCUGCaGCa---GCUCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 11529 | 0.66 | 0.476648 |
Target: 5'- --aGAuGGACGUCGaacuggcCGAG-GCCGCGGu -3' miRNA: 3'- cugCU-CCUGCAGCa------GCUCgCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 13762 | 0.75 | 0.117568 |
Target: 5'- cGCGAGGACGauuUCca-GAGCGCCGUGAa -3' miRNA: 3'- cUGCUCCUGC---AGcagCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 14704 | 0.67 | 0.391732 |
Target: 5'- cGCGGcGGGCGg-GcCGGGCGCgGCGAu -3' miRNA: 3'- cUGCU-CCUGCagCaGCUCGCGgCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 15985 | 0.72 | 0.206823 |
Target: 5'- -uCGAGGAUGUCGUgCGcGCgcagacccGCCGCGAg -3' miRNA: 3'- cuGCUCCUGCAGCA-GCuCG--------CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 16203 | 1.09 | 0.000385 |
Target: 5'- cGACGAGGACGUCGUCGAGCGCCGCGAa -3' miRNA: 3'- -CUGCUCCUGCAGCAGCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 16310 | 0.7 | 0.287802 |
Target: 5'- cACGcAGGACGcCGgccuguUCGAGguCGCCGCGAa -3' miRNA: 3'- cUGC-UCCUGCaGC------AGCUC--GCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 17275 | 0.74 | 0.15444 |
Target: 5'- gGGCGA-GACGUCGggCG-GCGCCGCGc -3' miRNA: 3'- -CUGCUcCUGCAGCa-GCuCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 18396 | 0.68 | 0.340068 |
Target: 5'- -cCGAGGuCGUCGgugCGuGCgcagacgGCCGCGAg -3' miRNA: 3'- cuGCUCCuGCAGCa--GCuCG-------CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 21053 | 0.67 | 0.428272 |
Target: 5'- cGAC-AGGuuCGUCGUCG-GCGCCGg-- -3' miRNA: 3'- -CUGcUCCu-GCAGCAGCuCGCGGCgcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 23786 | 0.66 | 0.486648 |
Target: 5'- cGACGAGcAUGUCGcccgCGAagccgGCGCCGCc- -3' miRNA: 3'- -CUGCUCcUGCAGCa---GCU-----CGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 26223 | 0.67 | 0.400675 |
Target: 5'- uGGCGGGGugGUUG-CGcGCGgCGCa- -3' miRNA: 3'- -CUGCUCCugCAGCaGCuCGCgGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 26502 | 0.67 | 0.437717 |
Target: 5'- cGCGcGGGCGUUucccUCGAucGCGCCGCGc -3' miRNA: 3'- cUGCuCCUGCAGc---AGCU--CGCGGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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