Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28049 | 5' | -59.1 | NC_005887.1 | + | 29946 | 0.78 | 0.079573 |
Target: 5'- -uCGGGaucGACGgUGUCGAGCGCCGCGAa -3' miRNA: 3'- cuGCUC---CUGCaGCAGCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 6552 | 0.66 | 0.455987 |
Target: 5'- cACGGGGcugucgccGCGcuacaacUCGUUGAGCGCCGaGAa -3' miRNA: 3'- cUGCUCC--------UGC-------AGCAGCUCGCGGCgCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 21053 | 0.67 | 0.428272 |
Target: 5'- cGAC-AGGuuCGUCGUCG-GCGCCGg-- -3' miRNA: 3'- -CUGcUCCu-GCAGCAGCuCGCGGCgcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 40750 | 0.67 | 0.400675 |
Target: 5'- -uCGAGGcgauCGcCGUUGGcGCGCCGCGc -3' miRNA: 3'- cuGCUCCu---GCaGCAGCU-CGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 34699 | 0.67 | 0.391732 |
Target: 5'- aGCGGGcGGCcGUCGUCGcgcuugcgguGCGCgGCGAu -3' miRNA: 3'- cUGCUC-CUG-CAGCAGCu---------CGCGgCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 14704 | 0.67 | 0.391732 |
Target: 5'- cGCGGcGGGCGg-GcCGGGCGCgGCGAu -3' miRNA: 3'- cUGCU-CCUGCagCaGCUCGCGgCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 35056 | 0.68 | 0.365693 |
Target: 5'- cGCGAGGucgcugcCGUCGUCG-GCgGgCGCGAc -3' miRNA: 3'- cUGCUCCu------GCAGCAGCuCG-CgGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 6155 | 0.68 | 0.365693 |
Target: 5'- cGACGAuggcGGAUGUCGcCaAGCGCCuCGAc -3' miRNA: 3'- -CUGCU----CCUGCAGCaGcUCGCGGcGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 32289 | 0.69 | 0.294968 |
Target: 5'- cACG-GGGCGaUCGUCGGgccagccggcGCGCCGCa- -3' miRNA: 3'- cUGCuCCUGC-AGCAGCU----------CGCGGCGcu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 13762 | 0.75 | 0.117568 |
Target: 5'- cGCGAGGACGauuUCca-GAGCGCCGUGAa -3' miRNA: 3'- cUGCUCCUGC---AGcagCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 27588 | 0.75 | 0.12085 |
Target: 5'- cGCGAGcGCGcCGUCGAGCGUCGUGu -3' miRNA: 3'- cUGCUCcUGCaGCAGCUCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2893 | 0.74 | 0.142395 |
Target: 5'- cGACGAcGGACa-CGUCGGcCGCCGCGAa -3' miRNA: 3'- -CUGCU-CCUGcaGCAGCUcGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 17275 | 0.74 | 0.15444 |
Target: 5'- gGGCGA-GACGUCGggCG-GCGCCGCGc -3' miRNA: 3'- -CUGCUcCUGCAGCa-GCuCGCGGCGCu -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 15985 | 0.72 | 0.206823 |
Target: 5'- -uCGAGGAUGUCGUgCGcGCgcagacccGCCGCGAg -3' miRNA: 3'- cuGCUCCUGCAGCA-GCuCG--------CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 16310 | 0.7 | 0.287802 |
Target: 5'- cACGcAGGACGcCGgccuguUCGAGguCGCCGCGAa -3' miRNA: 3'- cUGC-UCCUGCaGC------AGCUC--GCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 16203 | 1.09 | 0.000385 |
Target: 5'- cGACGAGGACGUCGUCGAGCGCCGCGAa -3' miRNA: 3'- -CUGCUCCUGCAGCAGCUCGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 38391 | 0.66 | 0.476648 |
Target: 5'- cGCGAGcaacGGCGg-GUCGAcgagcuucugcGCGCCGCGGa -3' miRNA: 3'- cUGCUC----CUGCagCAGCU-----------CGCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 34316 | 0.66 | 0.476648 |
Target: 5'- -uCGAGcACGUCGUCguacaucgaguuGAGCguaGCCGCGGc -3' miRNA: 3'- cuGCUCcUGCAGCAG------------CUCG---CGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 11529 | 0.66 | 0.476648 |
Target: 5'- --aGAuGGACGUCGaacuggcCGAG-GCCGCGGu -3' miRNA: 3'- cugCU-CCUGCAGCa------GCUCgCGGCGCU- -5' |
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28049 | 5' | -59.1 | NC_005887.1 | + | 2640 | 0.66 | 0.476648 |
Target: 5'- gGAUGAGGugG-CGgCGGGCaCuCGCGAu -3' miRNA: 3'- -CUGCUCCugCaGCaGCUCGcG-GCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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