miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 3' -53.8 NC_005887.1 + 9239 0.65 0.771802
Target:  5'- aCgGCGA--GGAACGCaagccgGGCGaccccgacuaccuGGAUCCg -3'
miRNA:   3'- -GgCGCUgaCCUUGCGa-----CCGU-------------UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 18914 0.66 0.762491
Target:  5'- -aGCGGCgGGAugGCgGGCGGcugcgacgagcuGAUCg -3'
miRNA:   3'- ggCGCUGaCCUugCGaCCGUU------------CUAGg -5'
28050 3' -53.8 NC_005887.1 + 15028 0.66 0.76249
Target:  5'- cUCGCG-CUGaaGAAUGCgGGCGAGAagUCg -3'
miRNA:   3'- -GGCGCuGAC--CUUGCGaCCGUUCU--AGg -5'
28050 3' -53.8 NC_005887.1 + 42064 0.66 0.761448
Target:  5'- cUCGcCGACUGGAucgacgaGCGCUgucgcguggGGCGcGAUgCCg -3'
miRNA:   3'- -GGC-GCUGACCU-------UGCGA---------CCGUuCUA-GG- -5'
28050 3' -53.8 NC_005887.1 + 16208 0.66 0.752013
Target:  5'- gCUGCGACcGGAcACGCaGGuCAcGAUCg -3'
miRNA:   3'- -GGCGCUGaCCU-UGCGaCC-GUuCUAGg -5'
28050 3' -53.8 NC_005887.1 + 6586 0.66 0.752013
Target:  5'- gCCGaGAacaaGGAcaacgucaucgACGCUGGCGgcaccGGAUCCg -3'
miRNA:   3'- -GGCgCUga--CCU-----------UGCGACCGU-----UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 9083 0.66 0.719869
Target:  5'- gCUGCGGC-GGGACGaaguuucGCGAGAUCa -3'
miRNA:   3'- -GGCGCUGaCCUUGCgac----CGUUCUAGg -5'
28050 3' -53.8 NC_005887.1 + 14825 0.66 0.719868
Target:  5'- gCCGCGACgcuGAugGCgGGCAc-GUUCg -3'
miRNA:   3'- -GGCGCUGac-CUugCGaCCGUucUAGG- -5'
28050 3' -53.8 NC_005887.1 + 4623 0.66 0.719868
Target:  5'- gCCGCGGCgccGGuggcCGCcGGCGcGAUCa -3'
miRNA:   3'- -GGCGCUGa--CCuu--GCGaCCGUuCUAGg -5'
28050 3' -53.8 NC_005887.1 + 16743 0.67 0.708957
Target:  5'- gUGCGA---GAGCGCUGGCGAaGUCa -3'
miRNA:   3'- gGCGCUgacCUUGCGACCGUUcUAGg -5'
28050 3' -53.8 NC_005887.1 + 22604 0.67 0.697967
Target:  5'- gUGCGugUGGAuCGCUGcGCGcGucgCCu -3'
miRNA:   3'- gGCGCugACCUuGCGAC-CGUuCua-GG- -5'
28050 3' -53.8 NC_005887.1 + 16404 0.67 0.697967
Target:  5'- gCCGcCGGCcGGAagcucACGCaGGCcGAGAUCg -3'
miRNA:   3'- -GGC-GCUGaCCU-----UGCGaCCG-UUCUAGg -5'
28050 3' -53.8 NC_005887.1 + 26836 0.67 0.6758
Target:  5'- cUCGCGACguccGGAAa-CUGGCcGGcGUCCa -3'
miRNA:   3'- -GGCGCUGa---CCUUgcGACCGuUC-UAGG- -5'
28050 3' -53.8 NC_005887.1 + 10762 0.67 0.6758
Target:  5'- gCGCGGCgGGuACGaggGGCAgucguGGAUCUg -3'
miRNA:   3'- gGCGCUGaCCuUGCga-CCGU-----UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 8475 0.67 0.6758
Target:  5'- aCgGCGAC-GGAGCGCUGucggcugccGCAGGcUCg -3'
miRNA:   3'- -GgCGCUGaCCUUGCGAC---------CGUUCuAGg -5'
28050 3' -53.8 NC_005887.1 + 41491 0.67 0.672457
Target:  5'- cCCGCauggcaccGGCUcGAACggcaagucgacgguGCUcGGCAAGAUCCg -3'
miRNA:   3'- -GGCG--------CUGAcCUUG--------------CGA-CCGUUCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 26213 0.67 0.664646
Target:  5'- gCgGUGGCcGGccuGCaGCUGGCGcacGGGUCCg -3'
miRNA:   3'- -GgCGCUGaCCu--UG-CGACCGU---UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 15391 0.68 0.653461
Target:  5'- gCCGCG-CUGaucGCGCgcgGGCAgcGGAUCg -3'
miRNA:   3'- -GGCGCuGACcu-UGCGa--CCGU--UCUAGg -5'
28050 3' -53.8 NC_005887.1 + 12143 0.68 0.63104
Target:  5'- gCCGCGACgcGGcGugGCUGGCcggcGAGAa-- -3'
miRNA:   3'- -GGCGCUGa-CC-UugCGACCG----UUCUagg -5'
28050 3' -53.8 NC_005887.1 + 29976 0.68 0.619826
Target:  5'- aCCGCcGC-GcGGAUGCUGuCGAGGUCCa -3'
miRNA:   3'- -GGCGcUGaC-CUUGCGACcGUUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.