miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 3' -53.8 NC_005887.1 + 16833 0.68 0.597441
Target:  5'- cCCGCGA-UGGAGCGCgacaucauccGCGAGGUguaCCg -3'
miRNA:   3'- -GGCGCUgACCUUGCGac--------CGUUCUA---GG- -5'
28050 3' -53.8 NC_005887.1 + 26333 0.69 0.575178
Target:  5'- gCCGUGGCcGG--CGCUGGCcGGGUgCg -3'
miRNA:   3'- -GGCGCUGaCCuuGCGACCGuUCUAgG- -5'
28050 3' -53.8 NC_005887.1 + 27864 0.69 0.564116
Target:  5'- aCCGCGGCgGGcACGauCUGcGCGAGGcCCg -3'
miRNA:   3'- -GGCGCUGaCCuUGC--GAC-CGUUCUaGG- -5'
28050 3' -53.8 NC_005887.1 + 11335 0.69 0.542169
Target:  5'- aCCGCGACggccGGuACGCUGaGCAcacuGAgCCu -3'
miRNA:   3'- -GGCGCUGa---CCuUGCGAC-CGUu---CUaGG- -5'
28050 3' -53.8 NC_005887.1 + 8580 0.7 0.531301
Target:  5'- aCCGCaGCaGGuuucguucGACGCUGGCGAGcUCUc -3'
miRNA:   3'- -GGCGcUGaCC--------UUGCGACCGUUCuAGG- -5'
28050 3' -53.8 NC_005887.1 + 279 0.7 0.520513
Target:  5'- aCGUGGCgcgGGAACuGCgUGGCGuGAUCa -3'
miRNA:   3'- gGCGCUGa--CCUUG-CG-ACCGUuCUAGg -5'
28050 3' -53.8 NC_005887.1 + 37524 0.71 0.467997
Target:  5'- aCgGuCGACUGGuugGCGCggcagaacUGcGCGAGAUCCg -3'
miRNA:   3'- -GgC-GCUGACCu--UGCG--------AC-CGUUCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 29308 0.71 0.437825
Target:  5'- aCGCGGC---GACGCUGGCcguguGGAUCUg -3'
miRNA:   3'- gGCGCUGaccUUGCGACCGu----UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 6816 0.72 0.381003
Target:  5'- gCGCGACUGGcgcuACG-UGGCGcGGGUCUg -3'
miRNA:   3'- gGCGCUGACCu---UGCgACCGU-UCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 12191 0.73 0.354499
Target:  5'- uCCGCGACUucGACGCcGGCAucGGcgCCg -3'
miRNA:   3'- -GGCGCUGAccUUGCGaCCGU--UCuaGG- -5'
28050 3' -53.8 NC_005887.1 + 16450 0.74 0.297846
Target:  5'- aCCGCGuGCgcgcGGGcauGCGCUcgaccgcgcGGCAGGAUCCg -3'
miRNA:   3'- -GGCGC-UGa---CCU---UGCGA---------CCGUUCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 26426 0.75 0.275092
Target:  5'- gCCGCG-CgGGAacgcGCGCUGcagccgcGCGAGAUCCg -3'
miRNA:   3'- -GGCGCuGaCCU----UGCGAC-------CGUUCUAGG- -5'
28050 3' -53.8 NC_005887.1 + 11387 0.75 0.255086
Target:  5'- gCGCaGCcGGAGCGCUGGCGgccGGcgCCg -3'
miRNA:   3'- gGCGcUGaCCUUGCGACCGU---UCuaGG- -5'
28050 3' -53.8 NC_005887.1 + 15977 1.13 0.000623
Target:  5'- uCCGCGACUGGAACGCUGGCAAGAUCCc -3'
miRNA:   3'- -GGCGCUGACCUUGCGACCGUUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.