miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 31867 0.67 0.182403
Target:  5'- gGUGCuCCCuugaaaucggugguGGUgGGCGUCGGCCAgcCGGu -3'
miRNA:   3'- -CGCGuGGG--------------CCGgUCGCGGCCGGU--GCC- -5'
28050 5' -65.4 NC_005887.1 + 31001 0.67 0.184275
Target:  5'- uGCGUcucucGCgUGGCgCGGCGCaggccacuauucgcaGGCCGCGGc -3'
miRNA:   3'- -CGCG-----UGgGCCG-GUCGCGg--------------CCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 7419 0.67 0.188549
Target:  5'- uCGCACCCGccGCCgccucguuuGGCGCUGGCgugCGCGu -3'
miRNA:   3'- cGCGUGGGC--CGG---------UCGCGGCCG---GUGCc -5'
28050 5' -65.4 NC_005887.1 + 40143 0.67 0.188549
Target:  5'- uGCGCGCUgCGcGCC-GCGCUcGCCGCGu -3'
miRNA:   3'- -CGCGUGG-GC-CGGuCGCGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 34378 0.67 0.188549
Target:  5'- cGCGUAUCagagugCGGCCgGGCGCgaGGCC-CGGc -3'
miRNA:   3'- -CGCGUGG------GCCGG-UCGCGg-CCGGuGCC- -5'
28050 5' -65.4 NC_005887.1 + 30811 0.67 0.192421
Target:  5'- cGCGCACCgcggccuCGGCCAGUucgacguccaucuGCauGCCGCGc -3'
miRNA:   3'- -CGCGUGG-------GCCGGUCG-------------CGgcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 17968 0.67 0.1934
Target:  5'- cGCGgGCUC-GCCGGCaUCGGCCGCa- -3'
miRNA:   3'- -CGCgUGGGcCGGUCGcGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 29792 0.67 0.179168
Target:  5'- cGCGCAgCUCGGgCCAGUaGCUGGaaguCUGCGGg -3'
miRNA:   3'- -CGCGU-GGGCC-GGUCG-CGGCC----GGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 15736 0.67 0.179168
Target:  5'- aCGCGCCagcugcaGGaCCAGgGCaugaaguacaaGGCCGCGGc -3'
miRNA:   3'- cGCGUGGg------CC-GGUCgCGg----------CCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 32756 0.67 0.1934
Target:  5'- uGCGCGCCggcgCGcGCCAuGCaGCCGGCUcguGCGc -3'
miRNA:   3'- -CGCGUGG----GC-CGGU-CG-CGGCCGG---UGCc -5'
28050 5' -65.4 NC_005887.1 + 10453 0.67 0.194876
Target:  5'- aGUGCACCCaucgcguacgguuacGGCCGGCGCgaucacgcucgacUGGuCCGCa- -3'
miRNA:   3'- -CGCGUGGG---------------CCGGUCGCG-------------GCC-GGUGcc -5'
28050 5' -65.4 NC_005887.1 + 28331 0.67 0.20343
Target:  5'- cUGUugUCGGCgucuGCGCCGG-CGCGGc -3'
miRNA:   3'- cGCGugGGCCGgu--CGCGGCCgGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 992 0.67 0.20343
Target:  5'- cGCGCAauugCCGGCCGccguGCGCgcgcuguacacCGGCUugaaGCGGa -3'
miRNA:   3'- -CGCGUg---GGCCGGU----CGCG-----------GCCGG----UGCC- -5'
28050 5' -65.4 NC_005887.1 + 27142 0.67 0.19836
Target:  5'- gGCGauCACgCGGCCGaa--CGGCCACGGg -3'
miRNA:   3'- -CGC--GUGgGCCGGUcgcgGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 337 0.67 0.19836
Target:  5'- cGCGCGCCgCGGCgAcacucGaCGUgGGCCGCaGGc -3'
miRNA:   3'- -CGCGUGG-GCCGgU-----C-GCGgCCGGUG-CC- -5'
28050 5' -65.4 NC_005887.1 + 7007 0.67 0.19836
Target:  5'- gGCGUgaaGCUCguGGCCGGcCGCCgcGGCgCGCGGc -3'
miRNA:   3'- -CGCG---UGGG--CCGGUC-GCGG--CCG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 41686 0.67 0.19686
Target:  5'- aGCaGCACCUGGUCGgcggucaugcgcguGCGCUcGCCGCGc -3'
miRNA:   3'- -CG-CGUGGGCCGGU--------------CGCGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 35130 0.67 0.1934
Target:  5'- aUGCGCCCGacGCCgacAGCGCCuGCgCACGc -3'
miRNA:   3'- cGCGUGGGC--CGG---UCGCGGcCG-GUGCc -5'
28050 5' -65.4 NC_005887.1 + 23794 0.67 0.1934
Target:  5'- aUGuCGCCCGcgaaGCCGGCGCC-GCCGCc- -3'
miRNA:   3'- cGC-GUGGGC----CGGUCGCGGcCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 26625 0.67 0.1934
Target:  5'- cUGCAgCUGGCgcguCAGCuccuucacGCCGGCgGCGGa -3'
miRNA:   3'- cGCGUgGGCCG----GUCG--------CGGCCGgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.