miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 10844 0.66 0.208612
Target:  5'- uGCGUucAUCCGcGCCGcGCGCgCGGCaauCGGu -3'
miRNA:   3'- -CGCG--UGGGC-CGGU-CGCG-GCCGgu-GCC- -5'
28050 5' -65.4 NC_005887.1 + 27824 0.66 0.208612
Target:  5'- cGCGcCGCCgaCGGCC-GCGCCuGCaaGCGGa -3'
miRNA:   3'- -CGC-GUGG--GCCGGuCGCGGcCGg-UGCC- -5'
28050 5' -65.4 NC_005887.1 + 23952 0.66 0.236256
Target:  5'- -gGCGCCgcggcguaGGCCaucggguucgcgAGCGCCGGCgcgccgucuaCGCGGa -3'
miRNA:   3'- cgCGUGGg-------CCGG------------UCGCGGCCG----------GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 34241 0.66 0.219319
Target:  5'- aGCgGCGCCuCGGCgAGCGCggCGaGCUGCGc -3'
miRNA:   3'- -CG-CGUGG-GCCGgUCGCG--GC-CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 8703 0.66 0.235674
Target:  5'- gGCGaucCGCCgCGGCgguaAGCGCuucgucgCGGCCACGa -3'
miRNA:   3'- -CGC---GUGG-GCCGg---UCGCG-------GCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2960 0.66 0.230492
Target:  5'- cGCG-ACCaCGGUUGcGcCGCCGGCCuCGGu -3'
miRNA:   3'- -CGCgUGG-GCCGGU-C-GCGGCCGGuGCC- -5'
28050 5' -65.4 NC_005887.1 + 40384 0.66 0.240363
Target:  5'- cGCGCgaggaaaucgugauGCCCGGCaCGGCcgacguGCCGGUCGa-- -3'
miRNA:   3'- -CGCG--------------UGGGCCG-GUCG------CGGCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 23447 0.66 0.230492
Target:  5'- aGCGCugCgGGCUgccGGUGCCGGgCGa-- -3'
miRNA:   3'- -CGCGugGgCCGG---UCGCGGCCgGUgcc -5'
28050 5' -65.4 NC_005887.1 + 31785 0.66 0.236256
Target:  5'- uGCGCuguCCCGuuugCGGCGCCGGCguUGa -3'
miRNA:   3'- -CGCGu--GGGCcg--GUCGCGGCCGguGCc -5'
28050 5' -65.4 NC_005887.1 + 31020 0.66 0.224847
Target:  5'- aGCGUA-CCGGCCgucgcgguugcGGCgcucgcugccgaGCCGGCCGCu- -3'
miRNA:   3'- -CGCGUgGGCCGG-----------UCG------------CGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 15267 0.66 0.230492
Target:  5'- aGUGCugCgCGGCgAGCguccGCCGGCgaACGa -3'
miRNA:   3'- -CGCGugG-GCCGgUCG----CGGCCGg-UGCc -5'
28050 5' -65.4 NC_005887.1 + 37725 0.66 0.208612
Target:  5'- uCGCGCCggCGGCCaccGGCGCC-GCgGCGa -3'
miRNA:   3'- cGCGUGG--GCCGG---UCGCGGcCGgUGCc -5'
28050 5' -65.4 NC_005887.1 + 20245 0.66 0.214444
Target:  5'- uCGCACCCGGCagcaguuuccacagaAGgGCCccgacGGCCGCc- -3'
miRNA:   3'- cGCGUGGGCCGg--------------UCgCGG-----CCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 40365 0.66 0.229922
Target:  5'- -aGUAgCCGGCCGGCaGguugucgauguucUCGGCCGcCGGg -3'
miRNA:   3'- cgCGUgGGCCGGUCG-C-------------GGCCGGU-GCC- -5'
28050 5' -65.4 NC_005887.1 + 4232 0.66 0.208612
Target:  5'- cGUGCuGCUCGcGCCGaCGCuCGGCCGCa- -3'
miRNA:   3'- -CGCG-UGGGC-CGGUcGCG-GCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 13945 0.66 0.224289
Target:  5'- cGCGCGCUCGGCUgcgacguGCGCgugacgaCaGCCGCGa -3'
miRNA:   3'- -CGCGUGGGCCGGu------CGCG-------GcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 4199 0.66 0.208612
Target:  5'- uCGCGCUCGGCCuGaUGuCCGGCauuuucaucgcCGCGGu -3'
miRNA:   3'- cGCGUGGGCCGGuC-GC-GGCCG-----------GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 21819 0.67 0.183805
Target:  5'- gGCGCugCCGGgC-GCGCCgaaugaaacGGCCAUu- -3'
miRNA:   3'- -CGCGugGGCCgGuCGCGG---------CCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 31001 0.67 0.184275
Target:  5'- uGCGUcucucGCgUGGCgCGGCGCaggccacuauucgcaGGCCGCGGc -3'
miRNA:   3'- -CGCG-----UGgGCCG-GUCGCGg--------------CCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 31867 0.67 0.182403
Target:  5'- gGUGCuCCCuugaaaucggugguGGUgGGCGUCGGCCAgcCGGu -3'
miRNA:   3'- -CGCGuGGG--------------CCGgUCGCGGCCGGU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.