miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 15267 0.66 0.230492
Target:  5'- aGUGCugCgCGGCgAGCguccGCCGGCgaACGa -3'
miRNA:   3'- -CGCGugG-GCCGgUCG----CGGCCGg-UGCc -5'
28050 5' -65.4 NC_005887.1 + 6399 0.66 0.213374
Target:  5'- aGCGUACgCGGaagucgacaaGGCGCUGGCCgaucugaACGGc -3'
miRNA:   3'- -CGCGUGgGCCgg--------UCGCGGCCGG-------UGCC- -5'
28050 5' -65.4 NC_005887.1 + 4232 0.66 0.208612
Target:  5'- cGUGCuGCUCGcGCCGaCGCuCGGCCGCa- -3'
miRNA:   3'- -CGCG-UGGGC-CGGUcGCG-GCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 13350 0.66 0.232783
Target:  5'- cGCGCaguggaaggaaaagaGCCCGGCgauGGCGCUcgcgcugaaGGCCggcGCGGc -3'
miRNA:   3'- -CGCG---------------UGGGCCGg--UCGCGG---------CCGG---UGCC- -5'
28050 5' -65.4 NC_005887.1 + 11304 0.66 0.219319
Target:  5'- cGCaGCGgCCGGCUcggcagcgAGCGCCGcaaCCGCGa -3'
miRNA:   3'- -CG-CGUgGGCCGG--------UCGCGGCc--GGUGCc -5'
28050 5' -65.4 NC_005887.1 + 14633 0.66 0.242141
Target:  5'- gGCGCGCUcaCGGCa---GCCGG-CGCGGu -3'
miRNA:   3'- -CGCGUGG--GCCGgucgCGGCCgGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 13044 0.66 0.224847
Target:  5'- --cCACaCGGCCAGCGUCG-CCGCGu -3'
miRNA:   3'- cgcGUGgGCCGGUCGCGGCcGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 12213 0.66 0.236256
Target:  5'- cCGCGCCgGGC--GCGCCGGauuuCACGc -3'
miRNA:   3'- cGCGUGGgCCGguCGCGGCCg---GUGCc -5'
28050 5' -65.4 NC_005887.1 + 41470 0.66 0.242141
Target:  5'- cCGCcugacucgUCCGG-CGGCGCgGGCCACGc -3'
miRNA:   3'- cGCGu-------GGGCCgGUCGCGgCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 31785 0.66 0.236256
Target:  5'- uGCGCuguCCCGuuugCGGCGCCGGCguUGa -3'
miRNA:   3'- -CGCGu--GGGCcg--GUCGCGGCCGguGCc -5'
28050 5' -65.4 NC_005887.1 + 14984 0.66 0.219319
Target:  5'- cCGCGCa-GGCC-GCGCaGGCCGCaGGc -3'
miRNA:   3'- cGCGUGggCCGGuCGCGgCCGGUG-CC- -5'
28050 5' -65.4 NC_005887.1 + 23188 0.66 0.224847
Target:  5'- cGCGCucgcgAUCaCGGCCGGgGgCGGCUACu- -3'
miRNA:   3'- -CGCG-----UGG-GCCGGUCgCgGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 8703 0.66 0.235674
Target:  5'- gGCGaucCGCCgCGGCgguaAGCGCuucgucgCGGCCACGa -3'
miRNA:   3'- -CGC---GUGG-GCCGg---UCGCG-------GCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 11211 0.66 0.219319
Target:  5'- uCGuCGCCgaaGGCguGCGCCGGaaauaUACGGu -3'
miRNA:   3'- cGC-GUGGg--CCGguCGCGGCCg----GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 4788 0.66 0.224847
Target:  5'- cGC-CAgCCGGCgAG-GCCGuGCuCGCGGa -3'
miRNA:   3'- -CGcGUgGGCCGgUCgCGGC-CG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 7692 0.66 0.242141
Target:  5'- gGCGgAUCCGGaaaCCGGCaaGCCGGCgCGCc- -3'
miRNA:   3'- -CGCgUGGGCC---GGUCG--CGGCCG-GUGcc -5'
28050 5' -65.4 NC_005887.1 + 40384 0.66 0.240363
Target:  5'- cGCGCgaggaaaucgugauGCCCGGCaCGGCcgacguGCCGGUCGa-- -3'
miRNA:   3'- -CGCG--------------UGGGCCG-GUCG------CGGCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 2697 0.66 0.208612
Target:  5'- aGCGUACgggCGGCaAGCgGCCGaGCCGCGc -3'
miRNA:   3'- -CGCGUGg--GCCGgUCG-CGGC-CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2229 0.66 0.236256
Target:  5'- gGCGCAUCCGGUCGGaaGUC-GUCGCGa -3'
miRNA:   3'- -CGCGUGGGCCGGUCg-CGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2348 0.66 0.242141
Target:  5'- uGCGCACCgCGacguCCuGCauGUCgGGCCACGGc -3'
miRNA:   3'- -CGCGUGG-GCc---GGuCG--CGG-CCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.