miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 337 0.67 0.19836
Target:  5'- cGCGCGCCgCGGCgAcacucGaCGUgGGCCGCaGGc -3'
miRNA:   3'- -CGCGUGG-GCCGgU-----C-GCGgCCGGUG-CC- -5'
28050 5' -65.4 NC_005887.1 + 545 0.71 0.0963
Target:  5'- cCGCGCgCCGcGCCGGauacagcgcgaagacCGCCGGCCAgaUGGg -3'
miRNA:   3'- cGCGUG-GGC-CGGUC---------------GCGGCCGGU--GCC- -5'
28050 5' -65.4 NC_005887.1 + 721 0.66 0.224847
Target:  5'- cGCGCAgacgcagcagauCCUcacgGGCC-GCGCCGGCCg--- -3'
miRNA:   3'- -CGCGU------------GGG----CCGGuCGCGGCCGGugcc -5'
28050 5' -65.4 NC_005887.1 + 760 0.74 0.061681
Target:  5'- cCGCACCUgGGCCGcCGCUGGCCGacaGGa -3'
miRNA:   3'- cGCGUGGG-CCGGUcGCGGCCGGUg--CC- -5'
28050 5' -65.4 NC_005887.1 + 992 0.67 0.20343
Target:  5'- cGCGCAauugCCGGCCGccguGCGCgcgcuguacacCGGCUugaaGCGGa -3'
miRNA:   3'- -CGCGUg---GGCCGGU----CGCG-----------GCCGG----UGCC- -5'
28050 5' -65.4 NC_005887.1 + 1073 0.67 0.179168
Target:  5'- aGCGCGCCCGuGCgcaggucgaCGGCGCCauuGCCgACGc -3'
miRNA:   3'- -CGCGUGGGC-CG---------GUCGCGGc--CGG-UGCc -5'
28050 5' -65.4 NC_005887.1 + 1677 0.71 0.091251
Target:  5'- cGCGCGCCaggugcaggauggugCGGCCGGUGaUCGGCgCGCGc -3'
miRNA:   3'- -CGCGUGG---------------GCCGGUCGC-GGCCG-GUGCc -5'
28050 5' -65.4 NC_005887.1 + 2168 0.76 0.038591
Target:  5'- -gGCAUggacuUCGGCCuGaCGCCGGCCGCGGu -3'
miRNA:   3'- cgCGUG-----GGCCGGuC-GCGGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 2229 0.66 0.236256
Target:  5'- gGCGCAUCCGGUCGGaaGUC-GUCGCGa -3'
miRNA:   3'- -CGCGUGGGCCGGUCg-CGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2348 0.66 0.242141
Target:  5'- uGCGCACCgCGacguCCuGCauGUCgGGCCACGGc -3'
miRNA:   3'- -CGCGUGG-GCc---GGuCG--CGG-CCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 2697 0.66 0.208612
Target:  5'- aGCGUACgggCGGCaAGCgGCCGaGCCGCGc -3'
miRNA:   3'- -CGCGUGg--GCCGgUCG-CGGC-CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2866 0.68 0.176435
Target:  5'- uCGUcaGCCUGGCCAGCGgCaacacgcgcuuuucaGGCaCGCGGc -3'
miRNA:   3'- cGCG--UGGGCCGGUCGCgG---------------CCG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 2960 0.66 0.230492
Target:  5'- cGCG-ACCaCGGUUGcGcCGCCGGCCuCGGu -3'
miRNA:   3'- -CGCgUGG-GCCGGU-C-GCGGCCGGuGCC- -5'
28050 5' -65.4 NC_005887.1 + 3009 0.76 0.037535
Target:  5'- aCGCGCCugCGGCCAGCGCCGcgggcaaaGCCAUGc -3'
miRNA:   3'- cGCGUGG--GCCGGUCGCGGC--------CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 3193 0.74 0.060013
Target:  5'- cCGCGCCCGGaCAGCGagaagGGCCGCGa -3'
miRNA:   3'- cGCGUGGGCCgGUCGCgg---CCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 4117 0.72 0.083241
Target:  5'- aGCGCucgaccauCCCGGCCAcGCGCaaGGCUGCGc -3'
miRNA:   3'- -CGCGu-------GGGCCGGU-CGCGg-CCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 4150 0.67 0.179168
Target:  5'- nGCGCGaCUGGCuCGGguauugaGCCGGCCAUGc -3'
miRNA:   3'- -CGCGUgGGCCG-GUCg------CGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 4199 0.66 0.208612
Target:  5'- uCGCGCUCGGCCuGaUGuCCGGCauuuucaucgcCGCGGu -3'
miRNA:   3'- cGCGUGGGCCGGuC-GC-GGCCG-----------GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 4232 0.66 0.208612
Target:  5'- cGUGCuGCUCGcGCCGaCGCuCGGCCGCa- -3'
miRNA:   3'- -CGCG-UGGGC-CGGUcGCG-GCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 4309 0.68 0.165872
Target:  5'- uCGCcgaGgCCGGCCAGCuGCCGgacauGCCGCaGGa -3'
miRNA:   3'- cGCG---UgGGCCGGUCG-CGGC-----CGGUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.