miRNA display CGI


Results 21 - 40 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 4788 0.66 0.224847
Target:  5'- cGC-CAgCCGGCgAG-GCCGuGCuCGCGGa -3'
miRNA:   3'- -CGcGUgGGCCGgUCgCGGC-CG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 5492 0.74 0.052307
Target:  5'- gGCGCAgcaCCGGCCgcAGCaCCGGCCGCa- -3'
miRNA:   3'- -CGCGUg--GGCCGG--UCGcGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 5746 0.7 0.114894
Target:  5'- -gGCcgggauUCCGGCCgaggccgcgaaGGCGCUGGCCGCGa -3'
miRNA:   3'- cgCGu-----GGGCCGG-----------UCGCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 5901 0.72 0.080796
Target:  5'- cCGCugCgGGCUGGCcgaagggcaagaaGCCGGCCGCGcGg -3'
miRNA:   3'- cGCGugGgCCGGUCG-------------CGGCCGGUGC-C- -5'
28050 5' -65.4 NC_005887.1 + 6318 0.68 0.149526
Target:  5'- uUGCGCCUcGCCGGCGCCgaGGUgACGc -3'
miRNA:   3'- cGCGUGGGcCGGUCGCGG--CCGgUGCc -5'
28050 5' -65.4 NC_005887.1 + 6399 0.66 0.213374
Target:  5'- aGCGUACgCGGaagucgacaaGGCGCUGGCCgaucugaACGGc -3'
miRNA:   3'- -CGCGUGgGCCgg--------UCGCGGCCGG-------UGCC- -5'
28050 5' -65.4 NC_005887.1 + 7007 0.67 0.19836
Target:  5'- gGCGUgaaGCUCguGGCCGGcCGCCgcGGCgCGCGGc -3'
miRNA:   3'- -CGCG---UGGG--CCGGUC-GCGG--CCG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 7400 0.71 0.103258
Target:  5'- uGCGCACgCCcGCCgAGUucgaaGCCGGCgACGGc -3'
miRNA:   3'- -CGCGUG-GGcCGG-UCG-----CGGCCGgUGCC- -5'
28050 5' -65.4 NC_005887.1 + 7419 0.67 0.188549
Target:  5'- uCGCACCCGccGCCgccucguuuGGCGCUGGCgugCGCGu -3'
miRNA:   3'- cGCGUGGGC--CGG---------UCGCGGCCG---GUGCc -5'
28050 5' -65.4 NC_005887.1 + 7579 0.68 0.16206
Target:  5'- gGCGUAUCCGGacggcaucgcguaagCGGCGCCGGUUgaucgauggGCGGc -3'
miRNA:   3'- -CGCGUGGGCCg--------------GUCGCGGCCGG---------UGCC- -5'
28050 5' -65.4 NC_005887.1 + 7692 0.66 0.242141
Target:  5'- gGCGgAUCCGGaaaCCGGCaaGCCGGCgCGCc- -3'
miRNA:   3'- -CGCgUGGGCC---GGUCG--CGGCCG-GUGcc -5'
28050 5' -65.4 NC_005887.1 + 7971 0.7 0.118932
Target:  5'- uCGCGCCCGGCCgccucugauacgcggGGCGCUcgucuccagccguGGCCggcgccACGGc -3'
miRNA:   3'- cGCGUGGGCCGG---------------UCGCGG-------------CCGG------UGCC- -5'
28050 5' -65.4 NC_005887.1 + 8056 0.68 0.174634
Target:  5'- uGC-CGCCCGcaGUCAGcCGCaCGGCgACGGc -3'
miRNA:   3'- -CGcGUGGGC--CGGUC-GCG-GCCGgUGCC- -5'
28050 5' -65.4 NC_005887.1 + 8466 0.68 0.157507
Target:  5'- -aGCGCCCGGCgCAacCGCuCGGCgACGa -3'
miRNA:   3'- cgCGUGGGCCG-GUc-GCG-GCCGgUGCc -5'
28050 5' -65.4 NC_005887.1 + 8703 0.66 0.235674
Target:  5'- gGCGaucCGCCgCGGCgguaAGCGCuucgucgCGGCCACGa -3'
miRNA:   3'- -CGC---GUGG-GCCGg---UCGCG-------GCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 9059 0.7 0.124412
Target:  5'- aCGUACgCGGauggaaguGCGCCGGCUGCGGc -3'
miRNA:   3'- cGCGUGgGCCggu-----CGCGGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 9582 0.71 0.095269
Target:  5'- uGCGCACgagCCGGCUGcauggcgcGCGCCGGCgCGCa- -3'
miRNA:   3'- -CGCGUG---GGCCGGU--------CGCGGCCG-GUGcc -5'
28050 5' -65.4 NC_005887.1 + 9831 0.72 0.078847
Target:  5'- uCGCAgCCGGUCAGCGC-GGCCAa-- -3'
miRNA:   3'- cGCGUgGGCCGGUCGCGgCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 9914 0.74 0.054964
Target:  5'- uGCGCAaccugaucgccgCCGGCCAcaucGcCGCCGGCCACGu -3'
miRNA:   3'- -CGCGUg-----------GGCCGGU----C-GCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 10105 0.68 0.149526
Target:  5'- cCGCGCCgaCGGCCAGCuGaUCGGCUGCa- -3'
miRNA:   3'- cGCGUGG--GCCGGUCG-C-GGCCGGUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.