miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 34334 0.73 0.065153
Target:  5'- -gGguUuuGuGCCguGGCGCCGGCCACGGc -3'
miRNA:   3'- cgCguGggC-CGG--UCGCGGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 26408 0.73 0.065153
Target:  5'- uGCgGCGCgUGGCCGGCGCaucgauucCGGCCcgcGCGGa -3'
miRNA:   3'- -CG-CGUGgGCCGGUCGCG--------GCCGG---UGCC- -5'
28050 5' -65.4 NC_005887.1 + 26065 0.73 0.065153
Target:  5'- gGUGCuCCUGGUCAGCGCgucagCGGCCcgcGCGGc -3'
miRNA:   3'- -CGCGuGGGCCGGUCGCG-----GCCGG---UGCC- -5'
28050 5' -65.4 NC_005887.1 + 38635 0.73 0.066958
Target:  5'- cGCGgAUCgCGGUCGGCGCgCGGCUcgACGGc -3'
miRNA:   3'- -CGCgUGG-GCCGGUCGCG-GCCGG--UGCC- -5'
28050 5' -65.4 NC_005887.1 + 15625 0.73 0.072472
Target:  5'- cGUGCGCCCGGUCuaugucgAGCuGCCcgcGGCCGCGc -3'
miRNA:   3'- -CGCGUGGGCCGG-------UCG-CGG---CCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 15923 0.73 0.072669
Target:  5'- uGCGUuccGCgCgGGCCGgaaucgauGCGCCGGCCACGc -3'
miRNA:   3'- -CGCG---UG-GgCCGGU--------CGCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 27233 0.73 0.072669
Target:  5'- gGCGCAUCgCGGCgCAacugcaucgcGCGCCGGcCCGCGu -3'
miRNA:   3'- -CGCGUGG-GCCG-GU----------CGCGGCC-GGUGCc -5'
28050 5' -65.4 NC_005887.1 + 26212 0.72 0.076734
Target:  5'- gGCgGUGgCCGGCCuGCaGCUGGCgCACGGg -3'
miRNA:   3'- -CG-CGUgGGCCGGuCG-CGGCCG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 12848 0.72 0.078847
Target:  5'- aCGCGCCC-GCCgucgaGGcCGCCGGCUACGa -3'
miRNA:   3'- cGCGUGGGcCGG-----UC-GCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 9831 0.72 0.078847
Target:  5'- uCGCAgCCGGUCAGCGC-GGCCAa-- -3'
miRNA:   3'- cGCGUgGGCCGGUCGCGgCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 5901 0.72 0.080796
Target:  5'- cCGCugCgGGCUGGCcgaagggcaagaaGCCGGCCGCGcGg -3'
miRNA:   3'- cGCGugGgCCGGUCG-------------CGGCCGGUGC-C- -5'
28050 5' -65.4 NC_005887.1 + 20539 0.72 0.081015
Target:  5'- gGCGCGCCCGG-CAGCGCC----GCGGa -3'
miRNA:   3'- -CGCGUGGGCCgGUCGCGGccggUGCC- -5'
28050 5' -65.4 NC_005887.1 + 4117 0.72 0.083241
Target:  5'- aGCGCucgaccauCCCGGCCAcGCGCaaGGCUGCGc -3'
miRNA:   3'- -CGCGu-------GGGCCGGU-CGCGg-CCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 36861 0.72 0.085525
Target:  5'- gGUGCugC-GGCCGGUGCUGcGCCAuCGGc -3'
miRNA:   3'- -CGCGugGgCCGGUCGCGGC-CGGU-GCC- -5'
28050 5' -65.4 NC_005887.1 + 41805 0.71 0.090272
Target:  5'- cGCGCuguAUCCGGCgCGGCGCgCGGCgGCc- -3'
miRNA:   3'- -CGCG---UGGGCCG-GUCGCG-GCCGgUGcc -5'
28050 5' -65.4 NC_005887.1 + 1677 0.71 0.091251
Target:  5'- cGCGCGCCaggugcaggauggugCGGCCGGUGaUCGGCgCGCGc -3'
miRNA:   3'- -CGCGUGG---------------GCCGGUCGC-GGCCG-GUGCc -5'
28050 5' -65.4 NC_005887.1 + 21051 0.71 0.091992
Target:  5'- gGCGUGCCCGugaaugugggcgacGCCAGCagcgcauacGCCGccGCCGCGGu -3'
miRNA:   3'- -CGCGUGGGC--------------CGGUCG---------CGGC--CGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 13293 0.71 0.092739
Target:  5'- gGCGCugaACCagauCGGCCAGgcguucggcaaCGCCGGCCGCa- -3'
miRNA:   3'- -CGCG---UGG----GCCGGUC-----------GCGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 11397 0.71 0.092739
Target:  5'- -aGCGCUggCGGCCGGCGCC-GCCAaGGc -3'
miRNA:   3'- cgCGUGG--GCCGGUCGCGGcCGGUgCC- -5'
28050 5' -65.4 NC_005887.1 + 31235 0.71 0.095013
Target:  5'- gGCGC-CUCGGCCAGCuucgcgcgcaccaGCCGaugcGCCACGcGg -3'
miRNA:   3'- -CGCGuGGGCCGGUCG-------------CGGC----CGGUGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.