miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 721 0.66 0.224847
Target:  5'- cGCGCAgacgcagcagauCCUcacgGGCC-GCGCCGGCCg--- -3'
miRNA:   3'- -CGCGU------------GGG----CCGGuCGCGGCCGGugcc -5'
28050 5' -65.4 NC_005887.1 + 13945 0.66 0.224289
Target:  5'- cGCGCGCUCGGCUgcgacguGCGCgugacgaCaGCCGCGa -3'
miRNA:   3'- -CGCGUGGGCCGGu------CGCG-------GcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 34241 0.66 0.219319
Target:  5'- aGCgGCGCCuCGGCgAGCGCggCGaGCUGCGc -3'
miRNA:   3'- -CG-CGUGG-GCCGgUCGCG--GC-CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 14984 0.66 0.219319
Target:  5'- cCGCGCa-GGCC-GCGCaGGCCGCaGGc -3'
miRNA:   3'- cGCGUGggCCGGuCGCGgCCGGUG-CC- -5'
28050 5' -65.4 NC_005887.1 + 11211 0.66 0.219319
Target:  5'- uCGuCGCCgaaGGCguGCGCCGGaaauaUACGGu -3'
miRNA:   3'- cGC-GUGGg--CCGguCGCGGCCg----GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 11304 0.66 0.219319
Target:  5'- cGCaGCGgCCGGCUcggcagcgAGCGCCGcaaCCGCGa -3'
miRNA:   3'- -CG-CGUgGGCCGG--------UCGCGGCc--GGUGCc -5'
28050 5' -65.4 NC_005887.1 + 20245 0.66 0.214444
Target:  5'- uCGCACCCGGCagcaguuuccacagaAGgGCCccgacGGCCGCc- -3'
miRNA:   3'- cGCGUGGGCCGg--------------UCgCGG-----CCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 6399 0.66 0.213374
Target:  5'- aGCGUACgCGGaagucgacaaGGCGCUGGCCgaucugaACGGc -3'
miRNA:   3'- -CGCGUGgGCCgg--------UCGCGGCCGG-------UGCC- -5'
28050 5' -65.4 NC_005887.1 + 2697 0.66 0.208612
Target:  5'- aGCGUACgggCGGCaAGCgGCCGaGCCGCGc -3'
miRNA:   3'- -CGCGUGg--GCCGgUCG-CGGC-CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 10844 0.66 0.208612
Target:  5'- uGCGUucAUCCGcGCCGcGCGCgCGGCaauCGGu -3'
miRNA:   3'- -CGCG--UGGGC-CGGU-CGCG-GCCGgu-GCC- -5'
28050 5' -65.4 NC_005887.1 + 27824 0.66 0.208612
Target:  5'- cGCGcCGCCgaCGGCC-GCGCCuGCaaGCGGa -3'
miRNA:   3'- -CGC-GUGG--GCCGGuCGCGGcCGg-UGCC- -5'
28050 5' -65.4 NC_005887.1 + 4199 0.66 0.208612
Target:  5'- uCGCGCUCGGCCuGaUGuCCGGCauuuucaucgcCGCGGu -3'
miRNA:   3'- cGCGUGGGCCGGuC-GC-GGCCG-----------GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 27735 0.66 0.208612
Target:  5'- aGCGCGCCCucgaCGGCGCCgacGGCCguACGc -3'
miRNA:   3'- -CGCGUGGGccg-GUCGCGG---CCGG--UGCc -5'
28050 5' -65.4 NC_005887.1 + 4232 0.66 0.208612
Target:  5'- cGUGCuGCUCGcGCCGaCGCuCGGCCGCa- -3'
miRNA:   3'- -CGCG-UGGGC-CGGUcGCG-GCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 37725 0.66 0.208612
Target:  5'- uCGCGCCggCGGCCaccGGCGCC-GCgGCGa -3'
miRNA:   3'- cGCGUGG--GCCGG---UCGCGGcCGgUGCc -5'
28050 5' -65.4 NC_005887.1 + 29198 0.66 0.208612
Target:  5'- cGCGCGCgCGGCaAGCGacgagacgaGGCC-CGGc -3'
miRNA:   3'- -CGCGUGgGCCGgUCGCgg-------CCGGuGCC- -5'
28050 5' -65.4 NC_005887.1 + 13306 0.66 0.208612
Target:  5'- aUGUA-CCGGCCGGCGaaaCGGCCGa-- -3'
miRNA:   3'- cGCGUgGGCCGGUCGCg--GCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 992 0.67 0.20343
Target:  5'- cGCGCAauugCCGGCCGccguGCGCgcgcuguacacCGGCUugaaGCGGa -3'
miRNA:   3'- -CGCGUg---GGCCGGU----CGCG-----------GCCGG----UGCC- -5'
28050 5' -65.4 NC_005887.1 + 28331 0.67 0.20343
Target:  5'- cUGUugUCGGCgucuGCGCCGG-CGCGGc -3'
miRNA:   3'- cGCGugGGCCGgu--CGCGGCCgGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 27142 0.67 0.19836
Target:  5'- gGCGauCACgCGGCCGaa--CGGCCACGGg -3'
miRNA:   3'- -CGC--GUGgGCCGGUcgcgGCCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.