miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 42048 0.71 0.097865
Target:  5'- cGCGCACCgCGGCCu-CGCUGaucacGCCACGc -3'
miRNA:   3'- -CGCGUGG-GCCGGucGCGGC-----CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 41977 0.68 0.157507
Target:  5'- gGCGCGCUCGccuaUCAGCaGCaCGGCCuGCGGc -3'
miRNA:   3'- -CGCGUGGGCc---GGUCG-CG-GCCGG-UGCC- -5'
28050 5' -65.4 NC_005887.1 + 41805 0.71 0.090272
Target:  5'- cGCGCuguAUCCGGCgCGGCGCgCGGCgGCc- -3'
miRNA:   3'- -CGCG---UGGGCCG-GUCGCG-GCCGgUGcc -5'
28050 5' -65.4 NC_005887.1 + 41686 0.67 0.19686
Target:  5'- aGCaGCACCUGGUCGgcggucaugcgcguGCGCUcGCCGCGc -3'
miRNA:   3'- -CG-CGUGGGCCGGU--------------CGCGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 41573 0.74 0.061512
Target:  5'- -aGCGCCgagacguuccuguCGGCCAGCGgCGGCCcagguGCGGc -3'
miRNA:   3'- cgCGUGG-------------GCCGGUCGCgGCCGG-----UGCC- -5'
28050 5' -65.4 NC_005887.1 + 41470 0.66 0.242141
Target:  5'- cCGCcugacucgUCCGG-CGGCGCgGGCCACGc -3'
miRNA:   3'- cGCGu-------GGGCCgGUCGCGgCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 41249 0.7 0.117988
Target:  5'- aCGCACCUGcUCGGCGUCGGCaAUGGc -3'
miRNA:   3'- cGCGUGGGCcGGUCGCGGCCGgUGCC- -5'
28050 5' -65.4 NC_005887.1 + 40683 0.68 0.174634
Target:  5'- cUGCACCUGGCgCGcGCGCaCGGCUggcaGGa -3'
miRNA:   3'- cGCGUGGGCCG-GU-CGCG-GCCGGug--CC- -5'
28050 5' -65.4 NC_005887.1 + 40384 0.66 0.240363
Target:  5'- cGCGCgaggaaaucgugauGCCCGGCaCGGCcgacguGCCGGUCGa-- -3'
miRNA:   3'- -CGCG--------------UGGGCCG-GUCG------CGGCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 40365 0.66 0.229922
Target:  5'- -aGUAgCCGGCCGGCaGguugucgauguucUCGGCCGcCGGg -3'
miRNA:   3'- cgCGUgGGCCGGUCG-C-------------GGCCGGU-GCC- -5'
28050 5' -65.4 NC_005887.1 + 40161 0.7 0.114894
Target:  5'- uGCGCugCCcgaucaccgcGGCCGGCGUCaGGCCGa-- -3'
miRNA:   3'- -CGCGugGG----------CCGGUCGCGG-CCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 40143 0.67 0.188549
Target:  5'- uGCGCGCUgCGcGCC-GCGCUcGCCGCGu -3'
miRNA:   3'- -CGCGUGG-GC-CGGuCGCGGcCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 40021 0.68 0.153469
Target:  5'- uGCGCAUCaUGGCgCGGCucgaggcgGCCGGCCuACGc -3'
miRNA:   3'- -CGCGUGG-GCCG-GUCG--------CGGCCGG-UGCc -5'
28050 5' -65.4 NC_005887.1 + 39432 0.67 0.1934
Target:  5'- uGCGCAgCuuGGCggCGGCGUCGuuCGCGGc -3'
miRNA:   3'- -CGCGU-GggCCG--GUCGCGGCcgGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 38635 0.73 0.066958
Target:  5'- cGCGgAUCgCGGUCGGCGCgCGGCUcgACGGc -3'
miRNA:   3'- -CGCgUGG-GCCGGUCGCG-GCCGG--UGCC- -5'
28050 5' -65.4 NC_005887.1 + 38032 0.67 0.179168
Target:  5'- uGCgGCAugUCCGG-CAGCugGCCGGCCuCGGc -3'
miRNA:   3'- -CG-CGU--GGGCCgGUCG--CGGCCGGuGCC- -5'
28050 5' -65.4 NC_005887.1 + 37725 0.66 0.208612
Target:  5'- uCGCGCCggCGGCCaccGGCGCC-GCgGCGa -3'
miRNA:   3'- cGCGUGG--GCCGG---UCGCGGcCGgUGCc -5'
28050 5' -65.4 NC_005887.1 + 37207 0.68 0.165872
Target:  5'- gGCGCGCCgacguCGGgCAGCGC-GGUCAUGc -3'
miRNA:   3'- -CGCGUGG-----GCCgGUCGCGgCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 36949 0.67 0.188549
Target:  5'- gGCGcCGCCC-GCCGGUucaCCGGUCGCGc -3'
miRNA:   3'- -CGC-GUGGGcCGGUCGc--GGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 36922 0.69 0.131159
Target:  5'- cGgGCGCgUGGUC-GCGCCGGUCGCu- -3'
miRNA:   3'- -CgCGUGgGCCGGuCGCGGCCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.