miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28050 5' -65.4 NC_005887.1 + 26332 0.71 0.095269
Target:  5'- -gGC-CgUGGCCGGCGCUGGCCG-GGu -3'
miRNA:   3'- cgCGuGgGCCGGUCGCGGCCGGUgCC- -5'
28050 5' -65.4 NC_005887.1 + 34334 0.73 0.065153
Target:  5'- -gGguUuuGuGCCguGGCGCCGGCCACGGc -3'
miRNA:   3'- cgCguGggC-CGG--UCGCGGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 26065 0.73 0.065153
Target:  5'- gGUGCuCCUGGUCAGCGCgucagCGGCCcgcGCGGc -3'
miRNA:   3'- -CGCGuGGGCCGGUCGCG-----GCCGG---UGCC- -5'
28050 5' -65.4 NC_005887.1 + 27233 0.73 0.072669
Target:  5'- gGCGCAUCgCGGCgCAacugcaucgcGCGCCGGcCCGCGu -3'
miRNA:   3'- -CGCGUGG-GCCG-GU----------CGCGGCC-GGUGCc -5'
28050 5' -65.4 NC_005887.1 + 15923 0.73 0.072669
Target:  5'- uGCGUuccGCgCgGGCCGgaaucgauGCGCCGGCCACGc -3'
miRNA:   3'- -CGCG---UG-GgCCGGU--------CGCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 26212 0.72 0.076734
Target:  5'- gGCgGUGgCCGGCCuGCaGCUGGCgCACGGg -3'
miRNA:   3'- -CG-CGUgGGCCGGuCG-CGGCCG-GUGCC- -5'
28050 5' -65.4 NC_005887.1 + 9831 0.72 0.078847
Target:  5'- uCGCAgCCGGUCAGCGC-GGCCAa-- -3'
miRNA:   3'- cGCGUgGGCCGGUCGCGgCCGGUgcc -5'
28050 5' -65.4 NC_005887.1 + 11397 0.71 0.092739
Target:  5'- -aGCGCUggCGGCCGGCGCC-GCCAaGGc -3'
miRNA:   3'- cgCGUGG--GCCGGUCGCGGcCGGUgCC- -5'
28050 5' -65.4 NC_005887.1 + 13293 0.71 0.092739
Target:  5'- gGCGCugaACCagauCGGCCAGgcguucggcaaCGCCGGCCGCa- -3'
miRNA:   3'- -CGCG---UGG----GCCGGUC-----------GCGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 25006 0.74 0.061681
Target:  5'- aGCGUcaGCUCGcGCCGGCggccGCCGGCCAgcCGGu -3'
miRNA:   3'- -CGCG--UGGGC-CGGUCG----CGGCCGGU--GCC- -5'
28050 5' -65.4 NC_005887.1 + 41573 0.74 0.061512
Target:  5'- -aGCGCCgagacguuccuguCGGCCAGCGgCGGCCcagguGCGGc -3'
miRNA:   3'- cgCGUGG-------------GCCGGUCGCgGCCGG-----UGCC- -5'
28050 5' -65.4 NC_005887.1 + 18540 0.74 0.060013
Target:  5'- gGCGUuCUCGGUgggcggCGGCGCCGGCUucGCGGg -3'
miRNA:   3'- -CGCGuGGGCCG------GUCGCGGCCGG--UGCC- -5'
28050 5' -65.4 NC_005887.1 + 35910 0.77 0.03168
Target:  5'- cGCGCACUucgaucuCGGCCGGcCGuCCGGCCACa- -3'
miRNA:   3'- -CGCGUGG-------GCCGGUC-GC-GGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 3009 0.76 0.037535
Target:  5'- aCGCGCCugCGGCCAGCGCCGcgggcaaaGCCAUGc -3'
miRNA:   3'- cGCGUGG--GCCGGUCGCGGC--------CGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 2168 0.76 0.038591
Target:  5'- -gGCAUggacuUCGGCCuGaCGCCGGCCGCGGu -3'
miRNA:   3'- cgCGUG-----GGCCGGuC-GCGGCCGGUGCC- -5'
28050 5' -65.4 NC_005887.1 + 35333 0.76 0.041937
Target:  5'- cGCGCGCCgCGGCg---GCCGGCCACGa -3'
miRNA:   3'- -CGCGUGG-GCCGgucgCGGCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 24950 0.75 0.048155
Target:  5'- cGUGCGCgCgGGCCGccuuGCGCgCGGCCGCGa -3'
miRNA:   3'- -CGCGUG-GgCCGGU----CGCG-GCCGGUGCc -5'
28050 5' -65.4 NC_005887.1 + 5492 0.74 0.052307
Target:  5'- gGCGCAgcaCCGGCCgcAGCaCCGGCCGCa- -3'
miRNA:   3'- -CGCGUg--GGCCGG--UCGcGGCCGGUGcc -5'
28050 5' -65.4 NC_005887.1 + 17631 0.74 0.055267
Target:  5'- uGCGCACgaCGGUCAGCGCCGugaaGCUGCaGGg -3'
miRNA:   3'- -CGCGUGg-GCCGGUCGCGGC----CGGUG-CC- -5'
28050 5' -65.4 NC_005887.1 + 3193 0.74 0.060013
Target:  5'- cCGCGCCCGGaCAGCGagaagGGCCGCGa -3'
miRNA:   3'- cGCGUGGGCCgGUCGCgg---CCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.