miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 15440 1.1 0.000151
Target:  5'- gGCGGCCAGCGACUCGGGCGCAGCUUCu -3'
miRNA:   3'- -CGCCGGUCGCUGAGCCCGCGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 14704 0.79 0.039616
Target:  5'- cGCGGCgGGCgGGC-CGGGCGCGGCg-- -3'
miRNA:   3'- -CGCCGgUCG-CUGaGCCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 18794 0.75 0.083493
Target:  5'- cCGGCCGGCGAUgCGGGCGgcguCAGCg-- -3'
miRNA:   3'- cGCCGGUCGCUGaGCCCGC----GUCGaag -5'
28051 3' -60.9 NC_005887.1 + 28773 0.74 0.098871
Target:  5'- cGCGGCCuccuucGCGucgucggccuGCUCGGGCgGCAGCgcaUCg -3'
miRNA:   3'- -CGCCGGu-----CGC----------UGAGCCCG-CGUCGa--AG- -5'
28051 3' -60.9 NC_005887.1 + 41591 0.74 0.101682
Target:  5'- uCGGCCAGCGGCggccCaGGUGCGGCg-- -3'
miRNA:   3'- cGCCGGUCGCUGa---GcCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 1698 0.74 0.101682
Target:  5'- uGCGGCCGGUGA-UCGGcGCGC-GCUcgUCa -3'
miRNA:   3'- -CGCCGGUCGCUgAGCC-CGCGuCGA--AG- -5'
28051 3' -60.9 NC_005887.1 + 7018 0.74 0.101682
Target:  5'- cGUGGCCGGCcGCcgCGGcGCGCGGCa-- -3'
miRNA:   3'- -CGCCGGUCGcUGa-GCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 32435 0.73 0.116897
Target:  5'- uGUGGCCGGCGGCgaucaGGuuGCGCAGCc-- -3'
miRNA:   3'- -CGCCGGUCGCUGag---CC--CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 24542 0.73 0.119189
Target:  5'- cGCGGCCGcaccuuCGGC-CGGGCGCccaugaucgccgucAGCUUCa -3'
miRNA:   3'- -CGCCGGUc-----GCUGaGCCCGCG--------------UCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 11530 0.73 0.120184
Target:  5'- cGCGGUcaagcugauCAGCaGCUCGGcGCGCAGCg-- -3'
miRNA:   3'- -CGCCG---------GUCGcUGAGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 7840 0.72 0.134213
Target:  5'- uGCGGCCugaugGGCGugcaguaccACggucCGGGCGaCAGCUUCu -3'
miRNA:   3'- -CGCCGG-----UCGC---------UGa---GCCCGC-GUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 17335 0.71 0.145708
Target:  5'- gGCuGGCCGGCGGC-CGccGGCGCgAGCUg- -3'
miRNA:   3'- -CG-CCGGUCGCUGaGC--CCGCG-UCGAag -5'
28051 3' -60.9 NC_005887.1 + 1486 0.71 0.158094
Target:  5'- aCGGCguGCGGCgcucgCGcGGCGCGGCc-- -3'
miRNA:   3'- cGCCGguCGCUGa----GC-CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 3016 0.71 0.158094
Target:  5'- uGCGGCCAGCGcCgCGGGCaaAGCc-- -3'
miRNA:   3'- -CGCCGGUCGCuGaGCCCGcgUCGaag -5'
28051 3' -60.9 NC_005887.1 + 32756 0.71 0.164195
Target:  5'- uGCGcGCCGGCGcgcgccaugcagccgGCUCGuGCGCAGgaUCg -3'
miRNA:   3'- -CGC-CGGUCGC---------------UGAGCcCGCGUCgaAG- -5'
28051 3' -60.9 NC_005887.1 + 27150 0.71 0.166873
Target:  5'- cGCGGCCGaaCGGCcaCGGGCGCGGgUUg -3'
miRNA:   3'- -CGCCGGUc-GCUGa-GCCCGCGUCgAAg -5'
28051 3' -60.9 NC_005887.1 + 28772 0.7 0.176086
Target:  5'- aCGGCCGGCGAUUUuuuGauaaGCAGCUUCg -3'
miRNA:   3'- cGCCGGUCGCUGAGcc-Cg---CGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 20537 0.7 0.176086
Target:  5'- -gGGCCuuGCG--UCGGGCGCAGCcggaUUCg -3'
miRNA:   3'- cgCCGGu-CGCugAGCCCGCGUCG----AAG- -5'
28051 3' -60.9 NC_005887.1 + 41623 0.7 0.182803
Target:  5'- cGCGGCCcgugaggaucugcuGCGuCUgCGcGGCGCAcGCUUCg -3'
miRNA:   3'- -CGCCGGu-------------CGCuGA-GC-CCGCGU-CGAAG- -5'
28051 3' -60.9 NC_005887.1 + 26874 0.7 0.190755
Target:  5'- cGCGGCCAgcucgaacGCGuCUUGGuGCGCGGUc-- -3'
miRNA:   3'- -CGCCGGU--------CGCuGAGCC-CGCGUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.