miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 882 0.66 0.333418
Target:  5'- cGCGccGCCGGaCGAgUCaGGCGgccuCGGCUUCg -3'
miRNA:   3'- -CGC--CGGUC-GCUgAGcCCGC----GUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 1486 0.71 0.158094
Target:  5'- aCGGCguGCGGCgcucgCGcGGCGCGGCc-- -3'
miRNA:   3'- cGCCGguCGCUGa----GC-CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 1584 0.66 0.325496
Target:  5'- cCGGCuCGGCGGCgcgCGGcGCGCcaacGGCg-- -3'
miRNA:   3'- cGCCG-GUCGCUGa--GCC-CGCG----UCGaag -5'
28051 3' -60.9 NC_005887.1 + 1698 0.74 0.101682
Target:  5'- uGCGGCCGGUGA-UCGGcGCGC-GCUcgUCa -3'
miRNA:   3'- -CGCCGGUCGCUgAGCC-CGCGuCGA--AG- -5'
28051 3' -60.9 NC_005887.1 + 1997 0.68 0.247578
Target:  5'- cCGGCCGGCuACUaCGaGCGCGGCa-- -3'
miRNA:   3'- cGCCGGUCGcUGA-GCcCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 2163 0.66 0.333418
Target:  5'- cUGGCCGGCGGCgauucccuUCGugccgucGCGCAGCUc- -3'
miRNA:   3'- cGCCGGUCGCUG--------AGCc------CGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 2205 0.69 0.211972
Target:  5'- cGCGGCgAGCG---CGGcGCGCAGCg-- -3'
miRNA:   3'- -CGCCGgUCGCugaGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 3016 0.71 0.158094
Target:  5'- uGCGGCCAGCGcCgCGGGCaaAGCc-- -3'
miRNA:   3'- -CGCCGGUCGCuGaGCCCGcgUCGaag -5'
28051 3' -60.9 NC_005887.1 + 4405 0.7 0.195877
Target:  5'- uGCGcGCCGGCGAa---GGCGCGGCg-- -3'
miRNA:   3'- -CGC-CGGUCGCUgagcCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 7018 0.74 0.101682
Target:  5'- cGUGGCCGGCcGCcgCGGcGCGCGGCa-- -3'
miRNA:   3'- -CGCCGGUCGcUGa-GCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 7840 0.72 0.134213
Target:  5'- uGCGGCCugaugGGCGugcaguaccACggucCGGGCGaCAGCUUCu -3'
miRNA:   3'- -CGCCGG-----UCGC---------UGa---GCCCGC-GUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 11001 0.69 0.20112
Target:  5'- aUGGCgUGGUG-CUCGGGUGCGGCggUCu -3'
miRNA:   3'- cGCCG-GUCGCuGAGCCCGCGUCGa-AG- -5'
28051 3' -60.9 NC_005887.1 + 11530 0.73 0.120184
Target:  5'- cGCGGUcaagcugauCAGCaGCUCGGcGCGCAGCg-- -3'
miRNA:   3'- -CGCCG---------GUCGcUGAGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 12653 0.68 0.253973
Target:  5'- aCGGCgAGUGGCUgCGcGUGCAGCUg- -3'
miRNA:   3'- cGCCGgUCGCUGA-GCcCGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 13892 0.68 0.260503
Target:  5'- aGCGGCCcggcaacaAGcCGACgaaGGGU-CAGCUUCg -3'
miRNA:   3'- -CGCCGG--------UC-GCUGag-CCCGcGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 14207 0.69 0.217585
Target:  5'- cGCGGCCucggacagGGCGGCgccgCGcuguucGGCGCGGCaUCc -3'
miRNA:   3'- -CGCCGG--------UCGCUGa---GC------CCGCGUCGaAG- -5'
28051 3' -60.9 NC_005887.1 + 14704 0.79 0.039616
Target:  5'- cGCGGCgGGCgGGC-CGGGCGCGGCg-- -3'
miRNA:   3'- -CGCCGgUCG-CUGaGCCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 15440 1.1 0.000151
Target:  5'- gGCGGCCAGCGACUCGGGCGCAGCUUCu -3'
miRNA:   3'- -CGCCGGUCGCUGAGCCCGCGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 15879 0.67 0.295213
Target:  5'- gGCGcaCCAGCaGCUCGGugcgcucgacGCGCAGCUg- -3'
miRNA:   3'- -CGCc-GGUCGcUGAGCC----------CGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 16014 0.66 0.317714
Target:  5'- cGCGaGCCGGUGACguaUCGGGagcCGCAGg--- -3'
miRNA:   3'- -CGC-CGGUCGCUG---AGCCC---GCGUCgaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.