miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 17335 0.71 0.145708
Target:  5'- gGCuGGCCGGCGGC-CGccGGCGCgAGCUg- -3'
miRNA:   3'- -CG-CCGGUCGCUGaGC--CCGCG-UCGAag -5'
28051 3' -60.9 NC_005887.1 + 18549 0.66 0.325496
Target:  5'- gGUGGgCGGCGGCgccggcuucgCGGGCGaCAuGCUcgUCg -3'
miRNA:   3'- -CGCCgGUCGCUGa---------GCCCGC-GU-CGA--AG- -5'
28051 3' -60.9 NC_005887.1 + 18794 0.75 0.083493
Target:  5'- cCGGCCGGCGAUgCGGGCGgcguCAGCg-- -3'
miRNA:   3'- cGCCGGUCGCUGaGCCCGC----GUCGaag -5'
28051 3' -60.9 NC_005887.1 + 20537 0.7 0.176086
Target:  5'- -gGGCCuuGCG--UCGGGCGCAGCcggaUUCg -3'
miRNA:   3'- cgCCGGu-CGCugAGCCCGCGUCG----AAG- -5'
28051 3' -60.9 NC_005887.1 + 21670 0.67 0.310073
Target:  5'- gGCGuGUCGcUGACgUCGGGgGCAGCUg- -3'
miRNA:   3'- -CGC-CGGUcGCUG-AGCCCgCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 22244 0.68 0.253327
Target:  5'- cGUGGUucacgauCAGCGACggUGGcGCGCAGCa-- -3'
miRNA:   3'- -CGCCG-------GUCGCUGa-GCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 23251 0.7 0.195877
Target:  5'- gGCGGUCGGCGcGCaaaaGGCGCAGCUc- -3'
miRNA:   3'- -CGCCGGUCGC-UGagc-CCGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 24542 0.73 0.119189
Target:  5'- cGCGGCCGcaccuuCGGC-CGGGCGCccaugaucgccgucAGCUUCa -3'
miRNA:   3'- -CGCCGGUc-----GCUGaGCCCGCG--------------UCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 24883 0.66 0.333418
Target:  5'- gGCGGCCGaugccGCGcGCUCGGucuucuuCGCAGCa-- -3'
miRNA:   3'- -CGCCGGU-----CGC-UGAGCCc------GCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 25491 0.66 0.317714
Target:  5'- cGCaG-CGGCGGCUCGgacgauGGCGCGGCg-- -3'
miRNA:   3'- -CGcCgGUCGCUGAGC------CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 26078 0.66 0.358027
Target:  5'- aGCGcGUCAGCGGCccgCGcGGCGUuucauGGCgUCg -3'
miRNA:   3'- -CGC-CGGUCGCUGa--GC-CCGCG-----UCGaAG- -5'
28051 3' -60.9 NC_005887.1 + 26335 0.69 0.206485
Target:  5'- cGUGGCCGGCGcugGC-CGGGUGC-GCg-- -3'
miRNA:   3'- -CGCCGGUCGC---UGaGCCCGCGuCGaag -5'
28051 3' -60.9 NC_005887.1 + 26401 0.68 0.253973
Target:  5'- aGCGGCguGCGGCgCGuGGC-CGGCgcaUCg -3'
miRNA:   3'- -CGCCGguCGCUGaGC-CCGcGUCGa--AG- -5'
28051 3' -60.9 NC_005887.1 + 26874 0.7 0.190755
Target:  5'- cGCGGCCAgcucgaacGCGuCUUGGuGCGCGGUc-- -3'
miRNA:   3'- -CGCCGGU--------CGCuGAGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 27150 0.71 0.166873
Target:  5'- cGCGGCCGaaCGGCcaCGGGCGCGGgUUg -3'
miRNA:   3'- -CGCCGGUc-GCUGa-GCCCGCGUCgAAg -5'
28051 3' -60.9 NC_005887.1 + 27368 0.68 0.235189
Target:  5'- uGCGGCCugcGCGGCcugCGcGGCGUAgGCgUCg -3'
miRNA:   3'- -CGCCGGu--CGCUGa--GC-CCGCGU-CGaAG- -5'
28051 3' -60.9 NC_005887.1 + 27827 0.69 0.214202
Target:  5'- aGCGGCUuucaCGACUucgccccuucgggaaCGGuGCGCAGCUUUu -3'
miRNA:   3'- -CGCCGGuc--GCUGA---------------GCC-CGCGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 27974 0.67 0.287993
Target:  5'- cGCGcGCCgagcGGCGACUCGaacaggugcccGGCacGCuGCUUCa -3'
miRNA:   3'- -CGC-CGG----UCGCUGAGC-----------CCG--CGuCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 28336 0.68 0.267168
Target:  5'- gGCGcGCCGGCGguuGCggaGGcGCGCGGCg-- -3'
miRNA:   3'- -CGC-CGGUCGC---UGag-CC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 28772 0.7 0.176086
Target:  5'- aCGGCCGGCGAUUUuuuGauaaGCAGCUUCg -3'
miRNA:   3'- cGCCGGUCGCUGAGcc-Cg---CGUCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.