miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 24542 0.73 0.119189
Target:  5'- cGCGGCCGcaccuuCGGC-CGGGCGCccaugaucgccgucAGCUUCa -3'
miRNA:   3'- -CGCCGGUc-----GCUGaGCCCGCG--------------UCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 11530 0.73 0.120184
Target:  5'- cGCGGUcaagcugauCAGCaGCUCGGcGCGCAGCg-- -3'
miRNA:   3'- -CGCCG---------GUCGcUGAGCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 1486 0.71 0.158094
Target:  5'- aCGGCguGCGGCgcucgCGcGGCGCGGCc-- -3'
miRNA:   3'- cGCCGguCGCUGa----GC-CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 3016 0.71 0.158094
Target:  5'- uGCGGCCAGCGcCgCGGGCaaAGCc-- -3'
miRNA:   3'- -CGCCGGUCGCuGaGCCCGcgUCGaag -5'
28051 3' -60.9 NC_005887.1 + 32756 0.71 0.164195
Target:  5'- uGCGcGCCGGCGcgcgccaugcagccgGCUCGuGCGCAGgaUCg -3'
miRNA:   3'- -CGC-CGGUCGC---------------UGAGCcCGCGUCgaAG- -5'
28051 3' -60.9 NC_005887.1 + 23251 0.7 0.195877
Target:  5'- gGCGGUCGGCGcGCaaaaGGCGCAGCUc- -3'
miRNA:   3'- -CGCCGGUCGC-UGagc-CCGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 4405 0.7 0.195877
Target:  5'- uGCGcGCCGGCGAa---GGCGCGGCg-- -3'
miRNA:   3'- -CGC-CGGUCGCUgagcCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 41623 0.7 0.182803
Target:  5'- cGCGGCCcgugaggaucugcuGCGuCUgCGcGGCGCAcGCUUCg -3'
miRNA:   3'- -CGCCGGu-------------CGCuGA-GC-CCGCGU-CGAAG- -5'
28051 3' -60.9 NC_005887.1 + 28772 0.7 0.176086
Target:  5'- aCGGCCGGCGAUUUuuuGauaaGCAGCUUCg -3'
miRNA:   3'- cGCCGGUCGCUGAGcc-Cg---CGUCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 20537 0.7 0.176086
Target:  5'- -gGGCCuuGCG--UCGGGCGCAGCcggaUUCg -3'
miRNA:   3'- cgCCGGu-CGCugAGCCCGCGUCG----AAG- -5'
28051 3' -60.9 NC_005887.1 + 27150 0.71 0.166873
Target:  5'- cGCGGCCGaaCGGCcaCGGGCGCGGgUUg -3'
miRNA:   3'- -CGCCGGUc-GCUGa-GCCCGCGUCgAAg -5'
28051 3' -60.9 NC_005887.1 + 35943 0.67 0.310073
Target:  5'- uCGGCCAGCGcCUUGucgacuuccGCGUAcGCUUCg -3'
miRNA:   3'- cGCCGGUCGCuGAGCc--------CGCGU-CGAAG- -5'
28051 3' -60.9 NC_005887.1 + 31119 0.67 0.310073
Target:  5'- cGCGGCCAuCGACcguauauuUCcGGCGCAcGcCUUCg -3'
miRNA:   3'- -CGCCGGUcGCUG--------AGcCCGCGU-C-GAAG- -5'
28051 3' -60.9 NC_005887.1 + 40548 0.66 0.324711
Target:  5'- -aGGUCGGCGGCacguccuUCGGGUaGCGGCc-- -3'
miRNA:   3'- cgCCGGUCGCUG-------AGCCCG-CGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 1584 0.66 0.325496
Target:  5'- cCGGCuCGGCGGCgcgCGGcGCGCcaacGGCg-- -3'
miRNA:   3'- cGCCG-GUCGCUGa--GCC-CGCG----UCGaag -5'
28051 3' -60.9 NC_005887.1 + 2163 0.66 0.333418
Target:  5'- cUGGCCGGCGGCgauucccuUCGugccgucGCGCAGCUc- -3'
miRNA:   3'- cGCCGGUCGCUG--------AGCc------CGCGUCGAag -5'
28051 3' -60.9 NC_005887.1 + 29114 0.66 0.349684
Target:  5'- gGCGGUCAGCGucuucucugcCUCGucuGGCGuCAGCa-- -3'
miRNA:   3'- -CGCCGGUCGCu---------GAGC---CCGC-GUCGaag -5'
28051 3' -60.9 NC_005887.1 + 29367 0.66 0.349684
Target:  5'- -gGGUCGGUGcCgCGGGuCGCcGCUUCg -3'
miRNA:   3'- cgCCGGUCGCuGaGCCC-GCGuCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 37771 0.66 0.349684
Target:  5'- cGCGGCCuGCGcCUCGGcggcuugcuGCGCcuGCa-- -3'
miRNA:   3'- -CGCCGGuCGCuGAGCC---------CGCGu-CGaag -5'
28051 3' -60.9 NC_005887.1 + 15440 1.1 0.000151
Target:  5'- gGCGGCCAGCGACUCGGGCGCAGCUUCu -3'
miRNA:   3'- -CGCCGGUCGCUGAGCCCGCGUCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.