miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28051 3' -60.9 NC_005887.1 + 41790 0.68 0.247578
Target:  5'- cUGGCCGGCGGucUUCGcgcuguauccGGCGCGGCg-- -3'
miRNA:   3'- cGCCGGUCGCU--GAGC----------CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 41623 0.7 0.182803
Target:  5'- cGCGGCCcgugaggaucugcuGCGuCUgCGcGGCGCAcGCUUCg -3'
miRNA:   3'- -CGCCGGu-------------CGCuGA-GC-CCGCGU-CGAAG- -5'
28051 3' -60.9 NC_005887.1 + 41591 0.74 0.101682
Target:  5'- uCGGCCAGCGGCggccCaGGUGCGGCg-- -3'
miRNA:   3'- cGCCGGUCGCUGa---GcCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 40548 0.66 0.324711
Target:  5'- -aGGUCGGCGGCacguccuUCGGGUaGCGGCc-- -3'
miRNA:   3'- cgCCGGUCGCUG-------AGCCCG-CGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 39154 0.67 0.287993
Target:  5'- cGCGGCCcuucucGCuGuC-CGGGCGCGGCa-- -3'
miRNA:   3'- -CGCCGGu-----CG-CuGaGCCCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 38642 0.69 0.20112
Target:  5'- cGCGGUCGGCGcgcgGCUCGacGGCGUGGUa-- -3'
miRNA:   3'- -CGCCGGUCGC----UGAGC--CCGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 38114 0.66 0.358027
Target:  5'- uGCGGCCgAGCG--UCGGcGCgaGCAGCa-- -3'
miRNA:   3'- -CGCCGG-UCGCugAGCC-CG--CGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 37771 0.66 0.349684
Target:  5'- cGCGGCCuGCGcCUCGGcggcuugcuGCGCcuGCa-- -3'
miRNA:   3'- -CGCCGGuCGCuGAGCC---------CGCGu-CGaag -5'
28051 3' -60.9 NC_005887.1 + 37336 0.69 0.217585
Target:  5'- uCGGUCuGCGcCUcggCGGGCGUgAGCUUCa -3'
miRNA:   3'- cGCCGGuCGCuGA---GCCCGCG-UCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 36842 0.68 0.253973
Target:  5'- uGCGGCCGGUG-CUgCGGcCGguGCUg- -3'
miRNA:   3'- -CGCCGGUCGCuGA-GCCcGCguCGAag -5'
28051 3' -60.9 NC_005887.1 + 36590 0.68 0.235189
Target:  5'- cGCGGCCAGCGcCUU---CGCGGCcUCg -3'
miRNA:   3'- -CGCCGGUCGCuGAGcccGCGUCGaAG- -5'
28051 3' -60.9 NC_005887.1 + 35943 0.67 0.310073
Target:  5'- uCGGCCAGCGcCUUGucgacuuccGCGUAcGCUUCg -3'
miRNA:   3'- cGCCGGUCGCuGAGCc--------CGCGU-CGAAG- -5'
28051 3' -60.9 NC_005887.1 + 35200 0.66 0.317714
Target:  5'- aCGGCgGgGCGAUUCGuuGCGCAGCa-- -3'
miRNA:   3'- cGCCGgU-CGCUGAGCc-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 34703 0.67 0.295213
Target:  5'- gGCGGCCGucgucGCG-CUugCGGuGCGCGGCg-- -3'
miRNA:   3'- -CGCCGGU-----CGCuGA--GCC-CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 32756 0.71 0.164195
Target:  5'- uGCGcGCCGGCGcgcgccaugcagccgGCUCGuGCGCAGgaUCg -3'
miRNA:   3'- -CGC-CGGUCGC---------------UGAGCcCGCGUCgaAG- -5'
28051 3' -60.9 NC_005887.1 + 32435 0.73 0.116897
Target:  5'- uGUGGCCGGCGGCgaucaGGuuGCGCAGCc-- -3'
miRNA:   3'- -CGCCGGUCGCUGag---CC--CGCGUCGaag -5'
28051 3' -60.9 NC_005887.1 + 31119 0.67 0.310073
Target:  5'- cGCGGCCAuCGACcguauauuUCcGGCGCAcGcCUUCg -3'
miRNA:   3'- -CGCCGGUcGCUG--------AGcCCGCGU-C-GAAG- -5'
28051 3' -60.9 NC_005887.1 + 29505 0.68 0.253973
Target:  5'- gGCGGCCu-CGACggCGGGCGCguuguagaacAGCacgUCg -3'
miRNA:   3'- -CGCCGGucGCUGa-GCCCGCG----------UCGa--AG- -5'
28051 3' -60.9 NC_005887.1 + 29367 0.66 0.349684
Target:  5'- -gGGUCGGUGcCgCGGGuCGCcGCUUCg -3'
miRNA:   3'- cgCCGGUCGCuGaGCCC-GCGuCGAAG- -5'
28051 3' -60.9 NC_005887.1 + 29114 0.66 0.349684
Target:  5'- gGCGGUCAGCGucuucucugcCUCGucuGGCGuCAGCa-- -3'
miRNA:   3'- -CGCCGGUCGCu---------GAGC---CCGC-GUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.