miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 14090 0.67 0.358134
Target:  5'- gAUGAUGCUCGucagUGGUGaagcgcCGCUCGCGa -3'
miRNA:   3'- gUGCUGCGAGCu---GCCGC------GCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 37446 0.67 0.358134
Target:  5'- gCGCGGCGCUUGcCuGCGCGgUuugcagUGCGCc -3'
miRNA:   3'- -GUGCUGCGAGCuGcCGCGCgA------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41270 0.67 0.358134
Target:  5'- aAUGGCGCcgUCGACcugcgcacgGGCGCGCUgcugccgcCGgGCa -3'
miRNA:   3'- gUGCUGCG--AGCUG---------CCGCGCGA--------GCgCG- -5'
28053 3' -60.4 NC_005887.1 + 12401 0.67 0.358134
Target:  5'- uCGCGGCGCUCGACacCGuCGaucccgagaUCGUGCg -3'
miRNA:   3'- -GUGCUGCGAGCUGccGC-GCg--------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14156 0.67 0.357305
Target:  5'- gCGCGGCGCUgauGCGGCGCacagcccgauguuGCUCGaCGa -3'
miRNA:   3'- -GUGCUGCGAgc-UGCCGCG-------------CGAGC-GCg -5'
28053 3' -60.4 NC_005887.1 + 26779 0.67 0.349908
Target:  5'- -uCGGCGaucagCGAauCGaGCGCGgUCGCGCg -3'
miRNA:   3'- guGCUGCga---GCU--GC-CGCGCgAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 21085 0.67 0.349093
Target:  5'- gGCGuugGCUUGAacgguauCGGCGCGgUCGcCGCa -3'
miRNA:   3'- gUGCug-CGAGCU-------GCCGCGCgAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 29377 0.67 0.349093
Target:  5'- aGCGGCaugccCUCGGCccaugccGGCGCGgUCGCGa -3'
miRNA:   3'- gUGCUGc----GAGCUG-------CCGCGCgAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 37183 0.67 0.341818
Target:  5'- -uCGACGCgugccaucagcaUCaGCGGCGCGCcgacgUCGgGCa -3'
miRNA:   3'- guGCUGCG------------AGcUGCCGCGCG-----AGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 37587 0.67 0.341818
Target:  5'- cCGCGGCGgaauucggauCUCGucaGuGCGCGCgucaCGCGCa -3'
miRNA:   3'- -GUGCUGC----------GAGCug-C-CGCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 20974 0.67 0.341818
Target:  5'- gCGCuGGCGCUUGGCGcCaCGCUCGCa- -3'
miRNA:   3'- -GUG-CUGCGAGCUGCcGcGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 31231 0.67 0.341818
Target:  5'- cCACGGCGcCUCGGCca-GC-UUCGCGCg -3'
miRNA:   3'- -GUGCUGC-GAGCUGccgCGcGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 6122 0.67 0.341818
Target:  5'- gGCGAaguggUGcCUCGAaaGCGUGCUCGaCGCc -3'
miRNA:   3'- gUGCU-----GC-GAGCUgcCGCGCGAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 4624 0.67 0.341818
Target:  5'- cCGCGGCGC-CGGUGGC-CGC-CgGCGCg -3'
miRNA:   3'- -GUGCUGCGaGCUGCCGcGCGaG-CGCG- -5'
28053 3' -60.4 NC_005887.1 + 19334 0.67 0.341818
Target:  5'- --aGGCGCUCGAUaaGCugaccaUGCUCGCGCa -3'
miRNA:   3'- gugCUGCGAGCUGc-CGc-----GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 3993 0.67 0.341818
Target:  5'- gGCG-UGCUUGAUGGCuucgaccuGCGUUCcgGCGCg -3'
miRNA:   3'- gUGCuGCGAGCUGCCG--------CGCGAG--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 41104 0.67 0.333863
Target:  5'- uGCGACGUuuUCG-CGuGCugaGCGC-CGCGCa -3'
miRNA:   3'- gUGCUGCG--AGCuGC-CG---CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 24880 0.67 0.333863
Target:  5'- gGCGGCgGC-CGAUGccGCGCGCUCGgucuucuuCGCa -3'
miRNA:   3'- gUGCUG-CGaGCUGC--CGCGCGAGC--------GCG- -5'
28053 3' -60.4 NC_005887.1 + 27545 0.67 0.333863
Target:  5'- gGCGGCGCUCcaucAUGGUGUGCagcaCGCaGCg -3'
miRNA:   3'- gUGCUGCGAGc---UGCCGCGCGa---GCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 15155 0.67 0.333863
Target:  5'- uGCaGGCGCUCGACGGCaugGCGaaguacCUgGCGg -3'
miRNA:   3'- gUG-CUGCGAGCUGCCG---CGC------GAgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.