miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 8391 0.66 0.383614
Target:  5'- gCGCGACGaagCGACaaGGCGCGUggGCcgaGCa -3'
miRNA:   3'- -GUGCUGCga-GCUG--CCGCGCGagCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 13798 0.66 0.383614
Target:  5'- gGCGACGCcuacaaauUCagcagccCGGCGCGCgugagCGUGCc -3'
miRNA:   3'- gUGCUGCG--------AGcu-----GCCGCGCGa----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 5250 0.66 0.383614
Target:  5'- gCGCGAuCGC-CGA-GGCuGUGCUCGCccGCu -3'
miRNA:   3'- -GUGCU-GCGaGCUgCCG-CGCGAGCG--CG- -5'
28053 3' -60.4 NC_005887.1 + 9129 0.66 0.383614
Target:  5'- gCACGGCGCgacCGagugccaguGCGGCGCGUUCa--- -3'
miRNA:   3'- -GUGCUGCGa--GC---------UGCCGCGCGAGcgcg -5'
28053 3' -60.4 NC_005887.1 + 38649 0.66 0.383614
Target:  5'- gGCGcGCgGCUCGACGGCGUGguagaagaUCGC-Cg -3'
miRNA:   3'- gUGC-UG-CGAGCUGCCGCGCg-------AGCGcG- -5'
28053 3' -60.4 NC_005887.1 + 8824 0.67 0.374988
Target:  5'- aGCaGGCGCUC-ACGGUGauCGCcgacaagaUCGCGCg -3'
miRNA:   3'- gUG-CUGCGAGcUGCCGC--GCG--------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 21272 0.67 0.374988
Target:  5'- cCGCGGCGg-CGGCGuauGCGCuGCUgGCGUc -3'
miRNA:   3'- -GUGCUGCgaGCUGC---CGCG-CGAgCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7942 0.67 0.374988
Target:  5'- gACGA-GCUCGACugauugcaGGcCGgGcCUCGCGCc -3'
miRNA:   3'- gUGCUgCGAGCUG--------CC-GCgC-GAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40846 0.67 0.374988
Target:  5'- gUACG-UGUUcCGcACGGcCGCGC-CGCGCg -3'
miRNA:   3'- -GUGCuGCGA-GC-UGCC-GCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 33211 0.67 0.374988
Target:  5'- -cCGACGUcgGACGGCcugaauaccgauGCGCUUGCGa -3'
miRNA:   3'- guGCUGCGagCUGCCG------------CGCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 19109 0.67 0.374988
Target:  5'- uGCG-CGC-CGACcGcCGcCGCUCGCGUg -3'
miRNA:   3'- gUGCuGCGaGCUGcC-GC-GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 11095 0.67 0.372426
Target:  5'- cCGCGugGCgcaUCGGCuGGUGCGCgcgaagcuggccgagGCGCc -3'
miRNA:   3'- -GUGCugCG---AGCUG-CCGCGCGag-------------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 42011 0.67 0.366495
Target:  5'- cCACGuCGagugUCGccGCGGCGCGCgauGCGUa -3'
miRNA:   3'- -GUGCuGCg---AGC--UGCCGCGCGag-CGCG- -5'
28053 3' -60.4 NC_005887.1 + 12081 0.67 0.366495
Target:  5'- gCACGuCGCUCGGucaggucacCGaCGUGCUggcCGCGCa -3'
miRNA:   3'- -GUGCuGCGAGCU---------GCcGCGCGA---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 21040 0.67 0.366495
Target:  5'- -uCGGCGCg-GugGGCGUGCcCGUGa -3'
miRNA:   3'- guGCUGCGagCugCCGCGCGaGCGCg -5'
28053 3' -60.4 NC_005887.1 + 35136 0.67 0.366495
Target:  5'- -cCGACGC-CGACaGCGC-CU-GCGCa -3'
miRNA:   3'- guGCUGCGaGCUGcCGCGcGAgCGCG- -5'
28053 3' -60.4 NC_005887.1 + 38398 0.67 0.365652
Target:  5'- aACGGCgGgUCGACGagcuucuGCGCGC-CGCGg -3'
miRNA:   3'- gUGCUG-CgAGCUGC-------CGCGCGaGCGCg -5'
28053 3' -60.4 NC_005887.1 + 41270 0.67 0.358134
Target:  5'- aAUGGCGCcgUCGACcugcgcacgGGCGCGCUgcugccgcCGgGCa -3'
miRNA:   3'- gUGCUGCG--AGCUG---------CCGCGCGA--------GCgCG- -5'
28053 3' -60.4 NC_005887.1 + 14090 0.67 0.358134
Target:  5'- gAUGAUGCUCGucagUGGUGaagcgcCGCUCGCGa -3'
miRNA:   3'- gUGCUGCGAGCu---GCCGC------GCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 37446 0.67 0.358134
Target:  5'- gCGCGGCGCUUGcCuGCGCGgUuugcagUGCGCc -3'
miRNA:   3'- -GUGCUGCGAGCuGcCGCGCgA------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.