miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 28586 0.66 0.410269
Target:  5'- uCACGGCGCUC--UGGaaauCGUcCUCGCGCc -3'
miRNA:   3'- -GUGCUGCGAGcuGCC----GCGcGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 36314 0.66 0.410269
Target:  5'- gCGCGGCGgUCGACGcCGCGCacUCGa-- -3'
miRNA:   3'- -GUGCUGCgAGCUGCcGCGCG--AGCgcg -5'
28053 3' -60.4 NC_005887.1 + 26209 0.66 0.410269
Target:  5'- gGCGGCGgUgGcCGGCcuGCaGCUgGCGCa -3'
miRNA:   3'- gUGCUGCgAgCuGCCG--CG-CGAgCGCG- -5'
28053 3' -60.4 NC_005887.1 + 35634 0.66 0.410269
Target:  5'- --aGuCGCUCGggcugaGCGGUGCgaGCUCGaCGCu -3'
miRNA:   3'- gugCuGCGAGC------UGCCGCG--CGAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 13979 0.66 0.401257
Target:  5'- cCGCGAaGC-CGuCGaCGCGUUCGUGCu -3'
miRNA:   3'- -GUGCUgCGaGCuGCcGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 29594 0.66 0.401257
Target:  5'- gACGGCGguguuCUCGcguugcagcGCGGCGCGaucgaGCGCa -3'
miRNA:   3'- gUGCUGC-----GAGC---------UGCCGCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 4782 0.66 0.401257
Target:  5'- aGCuGACGCcagcCGGCgaGGcCGUGCUCGCGg -3'
miRNA:   3'- gUG-CUGCGa---GCUG--CC-GCGCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 12579 0.66 0.401257
Target:  5'- gCGCGACGCggCGAUccucGCGaucaGCUCGCcggGCa -3'
miRNA:   3'- -GUGCUGCGa-GCUGc---CGCg---CGAGCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 7052 0.66 0.392371
Target:  5'- gAUGACcUUCGACGGCauuccggugcaGCGCaccgaCGCGCu -3'
miRNA:   3'- gUGCUGcGAGCUGCCG-----------CGCGa----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40007 0.66 0.392371
Target:  5'- gCAgGACG-UCG-CGGUGCGCaUCaugGCGCg -3'
miRNA:   3'- -GUgCUGCgAGCuGCCGCGCG-AG---CGCG- -5'
28053 3' -60.4 NC_005887.1 + 15423 0.66 0.392371
Target:  5'- aGCaGugGUucgUCGACGGCggccaGCGaCUCGgGCg -3'
miRNA:   3'- gUG-CugCG---AGCUGCCG-----CGC-GAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 7873 0.66 0.392371
Target:  5'- gGCGACaGCUUcuCGG-GCGCgagcCGCGCg -3'
miRNA:   3'- gUGCUG-CGAGcuGCCgCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4594 0.66 0.392371
Target:  5'- aACGACGa-CGGCaaguugGGCGgGCUCGUGg -3'
miRNA:   3'- gUGCUGCgaGCUG------CCGCgCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 12422 0.66 0.392371
Target:  5'- aACGACaC-CG-CGGCGCGCgcgaUCGCGa -3'
miRNA:   3'- gUGCUGcGaGCuGCCGCGCG----AGCGCg -5'
28053 3' -60.4 NC_005887.1 + 17580 0.66 0.392371
Target:  5'- gCGCGACGaaC-ACGcccgucaauccCGCGCUCGCGCg -3'
miRNA:   3'- -GUGCUGCgaGcUGCc----------GCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 12308 0.66 0.389731
Target:  5'- aGCuGGCGCUCGccuaugaggguggcGuCGGCGCGUUCGUc- -3'
miRNA:   3'- gUG-CUGCGAGC--------------U-GCCGCGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 34871 0.66 0.383614
Target:  5'- uCGCGGC-CUCGAUcGCcuuguCGUUCGCGCu -3'
miRNA:   3'- -GUGCUGcGAGCUGcCGc----GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 17190 0.66 0.383614
Target:  5'- aCGCGGcCGCaCG-CGGCaauguuGCGC-CGCGCa -3'
miRNA:   3'- -GUGCU-GCGaGCuGCCG------CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 8391 0.66 0.383614
Target:  5'- gCGCGACGaagCGACaaGGCGCGUggGCcgaGCa -3'
miRNA:   3'- -GUGCUGCga-GCUG--CCGCGCGagCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 14379 0.66 0.383614
Target:  5'- -uCGAguCGC-CGcuCGGCGCGCgCGCGUa -3'
miRNA:   3'- guGCU--GCGaGCu-GCCGCGCGaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.