miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 4624 0.67 0.341818
Target:  5'- cCGCGGCGC-CGGUGGC-CGC-CgGCGCg -3'
miRNA:   3'- -GUGCUGCGaGCUGCCGcGCGaG-CGCG- -5'
28053 3' -60.4 NC_005887.1 + 4782 0.66 0.401257
Target:  5'- aGCuGACGCcagcCGGCgaGGcCGUGCUCGCGg -3'
miRNA:   3'- gUG-CUGCGa---GCUG--CC-GCGCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 4891 0.66 0.419407
Target:  5'- gACGAUGgUCGccgagggcCGGCGCGagguguUCGUGCg -3'
miRNA:   3'- gUGCUGCgAGCu-------GCCGCGCg-----AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 5250 0.66 0.383614
Target:  5'- gCGCGAuCGC-CGA-GGCuGUGCUCGCccGCu -3'
miRNA:   3'- -GUGCU-GCGaGCUgCCG-CGCGAGCG--CG- -5'
28053 3' -60.4 NC_005887.1 + 5362 0.7 0.213714
Target:  5'- gCGCG-UGCUCGcCGGCGaGCUcgaccCGCGCg -3'
miRNA:   3'- -GUGCuGCGAGCuGCCGCgCGA-----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 5417 0.68 0.310819
Target:  5'- gGCGGCGCcgcagCGAcCGGCGCGaccaCGcCGCc -3'
miRNA:   3'- gUGCUGCGa----GCU-GCCGCGCga--GC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 5475 0.7 0.224404
Target:  5'- cCACGACGCaggcCGAUGGCGCagcaccgGC-CGCaGCa -3'
miRNA:   3'- -GUGCUGCGa---GCUGCCGCG-------CGaGCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 5719 0.68 0.32142
Target:  5'- cCACGACGCgcaGGagaaGGCGCGCgaugCacugaaacaaaagguGCGCg -3'
miRNA:   3'- -GUGCUGCGag-CUg---CCGCGCGa---G---------------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 5815 0.69 0.255351
Target:  5'- gGCGGCGaUCGAguCGGCGCgGgUCGCGa -3'
miRNA:   3'- gUGCUGCgAGCU--GCCGCG-CgAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 6122 0.67 0.341818
Target:  5'- gGCGAaguggUGcCUCGAaaGCGUGCUCGaCGCc -3'
miRNA:   3'- gUGCU-----GC-GAGCUgcCGCGCGAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 6272 0.71 0.197728
Target:  5'- cUACG-UGCagcuguacaUCGACGGCGUGCgcgaGCGCg -3'
miRNA:   3'- -GUGCuGCG---------AGCUGCCGCGCGag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 6866 0.68 0.318364
Target:  5'- uCGCGACG-UCGGCcaaCGCGCagGCGCu -3'
miRNA:   3'- -GUGCUGCgAGCUGcc-GCGCGagCGCG- -5'
28053 3' -60.4 NC_005887.1 + 6922 0.68 0.308582
Target:  5'- aCGCGuCGCUCGACcugaucgacucgugGGCGaagGCcgUGCGCg -3'
miRNA:   3'- -GUGCuGCGAGCUG--------------CCGCg--CGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7052 0.66 0.392371
Target:  5'- gAUGACcUUCGACGGCauuccggugcaGCGCaccgaCGCGCu -3'
miRNA:   3'- gUGCUGcGAGCUGCCG-----------CGCGa----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7120 0.7 0.219285
Target:  5'- aACGAgGCggGGCGGCGCuGCg-GCGCc -3'
miRNA:   3'- gUGCUgCGagCUGCCGCG-CGagCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7287 0.68 0.310819
Target:  5'- uCGCGccCGCcgaCGACGGCaGCGacCUCGCGUa -3'
miRNA:   3'- -GUGCu-GCGa--GCUGCCG-CGC--GAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7873 0.66 0.392371
Target:  5'- gGCGACaGCUUcuCGG-GCGCgagcCGCGCg -3'
miRNA:   3'- gUGCUG-CGAGcuGCCgCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7942 0.67 0.374988
Target:  5'- gACGA-GCUCGACugauugcaGGcCGgGcCUCGCGCc -3'
miRNA:   3'- gUGCUgCGAGCUG--------CC-GCgC-GAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 8045 0.7 0.219285
Target:  5'- gACGACguGCUCGAC-GCGUGUcugCGUGCg -3'
miRNA:   3'- gUGCUG--CGAGCUGcCGCGCGa--GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 8391 0.66 0.383614
Target:  5'- gCGCGACGaagCGACaaGGCGCGUggGCcgaGCa -3'
miRNA:   3'- -GUGCUGCga-GCUG--CCGCGCGagCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.