miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 438 0.69 0.282006
Target:  5'- uGCuGCGCUCGAacccucUGGCGCGUguggugCGgGCa -3'
miRNA:   3'- gUGcUGCGAGCU------GCCGCGCGa-----GCgCG- -5'
28053 3' -60.4 NC_005887.1 + 529 0.66 0.419407
Target:  5'- -cUGaACGCgUCGGCcgccGCGCGC-CGCGCc -3'
miRNA:   3'- guGC-UGCG-AGCUGc---CGCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 635 0.69 0.282006
Target:  5'- cCGCGAUGaaagCGcGCGGCgaGCGCaCGCGCa -3'
miRNA:   3'- -GUGCUGCga--GC-UGCCG--CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 982 0.68 0.326045
Target:  5'- gCACGgucugcucgaACGCUuccCGGCGGCGCGCggaUCGUa- -3'
miRNA:   3'- -GUGC----------UGCGA---GCUGCCGCGCG---AGCGcg -5'
28053 3' -60.4 NC_005887.1 + 1357 0.7 0.240981
Target:  5'- --aGACGCUCGAgCGcuacauccugucccGCGCG-UCGCGCu -3'
miRNA:   3'- gugCUGCGAGCU-GC--------------CGCGCgAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 1413 0.69 0.261815
Target:  5'- gCAUG-CGCUCGGCguugccgaacucGGUGCGCgCGCGg -3'
miRNA:   3'- -GUGCuGCGAGCUG------------CCGCGCGaGCGCg -5'
28053 3' -60.4 NC_005887.1 + 1477 0.86 0.014977
Target:  5'- -cCGACGC-CGACGGCgugcgGCGCUCGCGCg -3'
miRNA:   3'- guGCUGCGaGCUGCCG-----CGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 1568 0.84 0.022179
Target:  5'- cCACGAaccucgaccgccgGCUCGGCGGCGCGCggCGCGCc -3'
miRNA:   3'- -GUGCUg------------CGAGCUGCCGCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 1989 0.69 0.275141
Target:  5'- gCGCGACGg-CGgcACGGcCGCGCUCGaCGg -3'
miRNA:   3'- -GUGCUGCgaGC--UGCC-GCGCGAGC-GCg -5'
28053 3' -60.4 NC_005887.1 + 2204 0.77 0.066369
Target:  5'- aCGCGGCGagCG-CGGCGCGCagCGCGCa -3'
miRNA:   3'- -GUGCUGCgaGCuGCCGCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 2338 0.66 0.428667
Target:  5'- cUAUGGCGaucCGGCGGgcgaccaGCGCUCGCa- -3'
miRNA:   3'- -GUGCUGCga-GCUGCCg------CGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 2477 0.75 0.103689
Target:  5'- gCGCuGACGCggaucaUCGACGGCGagcccggccUGCUCGUGCa -3'
miRNA:   3'- -GUG-CUGCG------AGCUGCCGC---------GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 2515 0.69 0.249018
Target:  5'- -uUGAUGUgCGACGGCG-GCccgUCGCGCu -3'
miRNA:   3'- guGCUGCGaGCUGCCGCgCG---AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 2562 0.72 0.160119
Target:  5'- gACGACGCgcgcaaCGAuCGGCGCGa--GCGCc -3'
miRNA:   3'- gUGCUGCGa-----GCU-GCCGCGCgagCGCG- -5'
28053 3' -60.4 NC_005887.1 + 3233 0.71 0.202938
Target:  5'- --aGAUGUucgauUCGACcGCGcCGCUCGCGCu -3'
miRNA:   3'- gugCUGCG-----AGCUGcCGC-GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 3993 0.67 0.341818
Target:  5'- gGCG-UGCUUGAUGGCuucgaccuGCGUUCcgGCGCg -3'
miRNA:   3'- gUGCuGCGAGCUGCCG--------CGCGAG--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 4114 0.66 0.419407
Target:  5'- -uCGAgCGCUCGAccauccCGGCcacGCGCaaggcugCGCGCg -3'
miRNA:   3'- guGCU-GCGAGCU------GCCG---CGCGa------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4213 0.68 0.303411
Target:  5'- aGCGcGCGCagGAgaaaGGCGUgcuGCUCGCGCc -3'
miRNA:   3'- gUGC-UGCGagCUg---CCGCG---CGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4480 0.76 0.078539
Target:  5'- cCGCGAaggUGC-CGaACGGCGCGCgcaUCGCGCg -3'
miRNA:   3'- -GUGCU---GCGaGC-UGCCGCGCG---AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4594 0.66 0.392371
Target:  5'- aACGACGa-CGGCaaguugGGCGgGCUCGUGg -3'
miRNA:   3'- gUGCUGCgaGCUG------CCGCgCGAGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.