miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 27023 0.73 0.132635
Target:  5'- uGCGcaAC-CUCGGCGaGCGCGCgacCGCGCa -3'
miRNA:   3'- gUGC--UGcGAGCUGC-CGCGCGa--GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14826 0.75 0.098117
Target:  5'- cCGCGACGCU-GAUGGCGgGCacguUCGCGg -3'
miRNA:   3'- -GUGCUGCGAgCUGCCGCgCG----AGCGCg -5'
28053 3' -60.4 NC_005887.1 + 2477 0.75 0.103689
Target:  5'- gCGCuGACGCggaucaUCGACGGCGagcccggccUGCUCGUGCa -3'
miRNA:   3'- -GUG-CUGCG------AGCUGCCGC---------GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 21806 0.75 0.109559
Target:  5'- aCACGACGUcCG-CGGCGCuGCcgggCGCGCc -3'
miRNA:   3'- -GUGCUGCGaGCuGCCGCG-CGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 29505 0.74 0.111685
Target:  5'- gGCGGC-CUCGACGGCgggcGCGUuguagaacagcacgUCGCGCg -3'
miRNA:   3'- gUGCUGcGAGCUGCCG----CGCG--------------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39935 0.74 0.118948
Target:  5'- --gGGCGCgUCGACGaCGCGCaUCGCGUg -3'
miRNA:   3'- gugCUGCG-AGCUGCcGCGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 36037 0.74 0.121245
Target:  5'- -uCGGCGC-CGGCGaggcgcaaggccucGaCGCGCUCGCGCa -3'
miRNA:   3'- guGCUGCGaGCUGC--------------C-GCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 26145 0.74 0.123582
Target:  5'- uCGCGGCGCUCGACGacguccucgucgauCGUGUcgCGCGCg -3'
miRNA:   3'- -GUGCUGCGAGCUGCc-------------GCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39014 0.74 0.129083
Target:  5'- cCACcGCGCagUCGACGGCG-GCUUGCuGCg -3'
miRNA:   3'- -GUGcUGCG--AGCUGCCGCgCGAGCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 30940 0.76 0.090036
Target:  5'- aGCG-CGCUCGGCGGUgaugucgGCGCcCGCGUa -3'
miRNA:   3'- gUGCuGCGAGCUGCCG-------CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 33945 0.76 0.0854
Target:  5'- gACGGCGCUCGGCGaGCaCGUcgCGUGCg -3'
miRNA:   3'- gUGCUGCGAGCUGC-CGcGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4480 0.76 0.078539
Target:  5'- cCGCGAaggUGC-CGaACGGCGCGCgcaUCGCGCg -3'
miRNA:   3'- -GUGCU---GCGaGC-UGCCGCGCG---AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 32742 0.85 0.017305
Target:  5'- gCGCGGCGCUCG-CGuGCGCGCcggCGCGCg -3'
miRNA:   3'- -GUGCUGCGAGCuGC-CGCGCGa--GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40528 0.85 0.019424
Target:  5'- aCGCGGCGCgcggcagcgaCGACGGUcugGCGCUCGCGCa -3'
miRNA:   3'- -GUGCUGCGa---------GCUGCCG---CGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 15550 0.8 0.039828
Target:  5'- gGCGACGaCUCGGCGcGCGCGaC-CGCGCu -3'
miRNA:   3'- gUGCUGC-GAGCUGC-CGCGC-GaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14532 0.79 0.054463
Target:  5'- gCGCGGCcgUCGGCGGCGCGUcgaucggcaugUCGCGCg -3'
miRNA:   3'- -GUGCUGcgAGCUGCCGCGCG-----------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14619 0.77 0.066369
Target:  5'- -uCGGCGCcgUCGAgGGCGCGCUCacggcagccgGCGCg -3'
miRNA:   3'- guGCUGCG--AGCUgCCGCGCGAG----------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 18431 0.77 0.068263
Target:  5'- gCACGACGCU-GAuCGGCGCGauCUCGaCGCa -3'
miRNA:   3'- -GUGCUGCGAgCU-GCCGCGC--GAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 40754 0.76 0.078539
Target:  5'- gGCGAuCGC-CGuuGGCGCGC-CGCGCg -3'
miRNA:   3'- gUGCU-GCGaGCugCCGCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41960 0.76 0.078539
Target:  5'- uCGCGugGUgCGugcGCGGCGCGCUCGCc- -3'
miRNA:   3'- -GUGCugCGaGC---UGCCGCGCGAGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.