miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 40658 0.66 0.428667
Target:  5'- cCGCGcagcuuGCGCUCGugcuCGGgGCGaucgaGCGCg -3'
miRNA:   3'- -GUGC------UGCGAGCu---GCCgCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 5250 0.66 0.383614
Target:  5'- gCGCGAuCGC-CGA-GGCuGUGCUCGCccGCu -3'
miRNA:   3'- -GUGCU-GCGaGCUgCCG-CGCGAGCG--CG- -5'
28053 3' -60.4 NC_005887.1 + 40846 0.67 0.374988
Target:  5'- gUACG-UGUUcCGcACGGcCGCGC-CGCGCg -3'
miRNA:   3'- -GUGCuGCGA-GC-UGCC-GCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14762 1.11 0.000202
Target:  5'- aCACGACGCUCGACGGCGCGCUCGCGCu -3'
miRNA:   3'- -GUGCUGCGAGCUGCCGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28772 0.66 0.427736
Target:  5'- aCGCGGCcuccuucGCgUCGuCGGCcUGCUCGgGCg -3'
miRNA:   3'- -GUGCUG-------CG-AGCuGCCGcGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 26714 0.66 0.427736
Target:  5'- aCACGGCGCccugaUCGGCGaGCccggccgccugcuGCGCgacgcccgUGCGCu -3'
miRNA:   3'- -GUGCUGCG-----AGCUGC-CG-------------CGCGa-------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28586 0.66 0.410269
Target:  5'- uCACGGCGCUC--UGGaaauCGUcCUCGCGCc -3'
miRNA:   3'- -GUGCUGCGAGcuGCC----GCGcGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 13979 0.66 0.401257
Target:  5'- cCGCGAaGC-CGuCGaCGCGUUCGUGCu -3'
miRNA:   3'- -GUGCUgCGaGCuGCcGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 7873 0.66 0.392371
Target:  5'- gGCGACaGCUUcuCGG-GCGCgagcCGCGCg -3'
miRNA:   3'- gUGCUG-CGAGcuGCCgCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 38649 0.66 0.383614
Target:  5'- gGCGcGCgGCUCGACGGCGUGguagaagaUCGC-Cg -3'
miRNA:   3'- gUGC-UG-CGAGCUGCCGCGCg-------AGCGcG- -5'
28053 3' -60.4 NC_005887.1 + 4594 0.66 0.392371
Target:  5'- aACGACGa-CGGCaaguugGGCGgGCUCGUGg -3'
miRNA:   3'- gUGCUGCgaGCUG------CCGCgCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 12579 0.66 0.401257
Target:  5'- gCGCGACGCggCGAUccucGCGaucaGCUCGCcggGCa -3'
miRNA:   3'- -GUGCUGCGa-GCUGc---CGCg---CGAGCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 38853 0.66 0.428667
Target:  5'- gACGAUGCccuugcCGACGuCGUGCUCgaucaucaGCGCg -3'
miRNA:   3'- gUGCUGCGa-----GCUGCcGCGCGAG--------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 12308 0.66 0.389731
Target:  5'- aGCuGGCGCUCGccuaugaggguggcGuCGGCGCGUUCGUc- -3'
miRNA:   3'- gUG-CUGCGAGC--------------U-GCCGCGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 19355 0.66 0.428667
Target:  5'- aGCGACcgGCgUCGaucaGCGGCaacGCGCcaugcUCGCGCa -3'
miRNA:   3'- gUGCUG--CG-AGC----UGCCG---CGCG-----AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 29594 0.66 0.401257
Target:  5'- gACGGCGguguuCUCGcguugcagcGCGGCGCGaucgaGCGCa -3'
miRNA:   3'- gUGCUGC-----GAGC---------UGCCGCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 13798 0.66 0.383614
Target:  5'- gGCGACGCcuacaaauUCagcagccCGGCGCGCgugagCGUGCc -3'
miRNA:   3'- gUGCUGCG--------AGcu-----GCCGCGCGa----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 9129 0.66 0.383614
Target:  5'- gCACGGCGCgacCGagugccaguGCGGCGCGUUCa--- -3'
miRNA:   3'- -GUGCUGCGa--GC---------UGCCGCGCGAGcgcg -5'
28053 3' -60.4 NC_005887.1 + 34044 0.66 0.428667
Target:  5'- gCGCGuccaucGCGUUCGGauCGGUgacGCGCuUCGCGUa -3'
miRNA:   3'- -GUGC------UGCGAGCU--GCCG---CGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4114 0.66 0.419407
Target:  5'- -uCGAgCGCUCGAccauccCGGCcacGCGCaaggcugCGCGCg -3'
miRNA:   3'- guGCU-GCGAGCU------GCCG---CGCGa------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.