miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 14762 1.11 0.000202
Target:  5'- aCACGACGCUCGACGGCGCGCUCGCGCu -3'
miRNA:   3'- -GUGCUGCGAGCUGCCGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 1477 0.86 0.014977
Target:  5'- -cCGACGC-CGACGGCgugcgGCGCUCGCGCg -3'
miRNA:   3'- guGCUGCGaGCUGCCG-----CGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 32742 0.85 0.017305
Target:  5'- gCGCGGCGCUCG-CGuGCGCGCcggCGCGCg -3'
miRNA:   3'- -GUGCUGCGAGCuGC-CGCGCGa--GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40528 0.85 0.019424
Target:  5'- aCGCGGCGCgcggcagcgaCGACGGUcugGCGCUCGCGCa -3'
miRNA:   3'- -GUGCUGCGa---------GCUGCCG---CGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 1568 0.84 0.022179
Target:  5'- cCACGAaccucgaccgccgGCUCGGCGGCGCGCggCGCGCc -3'
miRNA:   3'- -GUGCUg------------CGAGCUGCCGCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 9329 0.81 0.034522
Target:  5'- aGCGACGCuguugauuaUCGACGGCaGCGUgUCGCGCa -3'
miRNA:   3'- gUGCUGCG---------AGCUGCCG-CGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 15550 0.8 0.039828
Target:  5'- gGCGACGaCUCGGCGcGCGCGaC-CGCGCu -3'
miRNA:   3'- gUGCUGC-GAGCUGC-CGCGC-GaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39422 0.8 0.044641
Target:  5'- cCGCGGCGCUugcgcagcuuggCGGCGGCGuCGUUCGCGg -3'
miRNA:   3'- -GUGCUGCGA------------GCUGCCGC-GCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 14532 0.79 0.054463
Target:  5'- gCGCGGCcgUCGGCGGCGCGUcgaucggcaugUCGCGCg -3'
miRNA:   3'- -GUGCUGcgAGCUGCCGCGCG-----------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 34241 0.78 0.056027
Target:  5'- aGCGGCGcCUCGGCGaGCGCGgCgagcugCGCGCg -3'
miRNA:   3'- gUGCUGC-GAGCUGC-CGCGC-Ga-----GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14580 0.78 0.060986
Target:  5'- uCAUGGCGCucuaccUCGcCGGCGCGCUCG-GCa -3'
miRNA:   3'- -GUGCUGCG------AGCuGCCGCGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 27405 0.78 0.062732
Target:  5'- uGCGGCGCgUCGuACGGCaGCGCgcggCGUGCg -3'
miRNA:   3'- gUGCUGCG-AGC-UGCCG-CGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14619 0.77 0.066369
Target:  5'- -uCGGCGCcgUCGAgGGCGCGCUCacggcagccgGCGCg -3'
miRNA:   3'- guGCUGCG--AGCUgCCGCGCGAG----------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 2204 0.77 0.066369
Target:  5'- aCGCGGCGagCG-CGGCGCGCagCGCGCa -3'
miRNA:   3'- -GUGCUGCgaGCuGCCGCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 18431 0.77 0.068263
Target:  5'- gCACGACGCU-GAuCGGCGCGauCUCGaCGCa -3'
miRNA:   3'- -GUGCUGCGAgCU-GCCGCGC--GAGC-GCG- -5'
28053 3' -60.4 NC_005887.1 + 25153 0.77 0.068263
Target:  5'- gCGCGGCGCaacauugccgCGuGCGGcCGCGUUCGCGCg -3'
miRNA:   3'- -GUGCUGCGa---------GC-UGCC-GCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40754 0.76 0.078539
Target:  5'- gGCGAuCGC-CGuuGGCGCGC-CGCGCg -3'
miRNA:   3'- gUGCU-GCGaGCugCCGCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41960 0.76 0.078539
Target:  5'- uCGCGugGUgCGugcGCGGCGCGCUCGCc- -3'
miRNA:   3'- -GUGCugCGaGC---UGCCGCGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 4480 0.76 0.078539
Target:  5'- cCGCGAaggUGC-CGaACGGCGCGCgcaUCGCGCg -3'
miRNA:   3'- -GUGCU---GCGaGC-UGCCGCGCG---AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 33945 0.76 0.0854
Target:  5'- gACGGCGCUCGGCGaGCaCGUcgCGUGCg -3'
miRNA:   3'- gUGCUGCGAGCUGC-CGcGCGa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.