miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 30940 0.76 0.090036
Target:  5'- aGCG-CGCUCGGCGGUgaugucgGCGCcCGCGUa -3'
miRNA:   3'- gUGCuGCGAGCUGCCG-------CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 9598 0.76 0.090286
Target:  5'- gCAUGGCGCgCGcCGGCGCGCaCGCGa -3'
miRNA:   3'- -GUGCUGCGaGCuGCCGCGCGaGCGCg -5'
28053 3' -60.4 NC_005887.1 + 27746 0.75 0.095438
Target:  5'- gACGGCGC-CGACGGC-CGUaCGCGUa -3'
miRNA:   3'- gUGCUGCGaGCUGCCGcGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28324 0.75 0.095703
Target:  5'- gGCuGCGC-CGGCGGCGCGCcggcgguugcggaggCGCGCg -3'
miRNA:   3'- gUGcUGCGaGCUGCCGCGCGa--------------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14826 0.75 0.098117
Target:  5'- cCGCGACGCU-GAUGGCGgGCacguUCGCGg -3'
miRNA:   3'- -GUGCUGCGAgCUGCCGCgCG----AGCGCg -5'
28053 3' -60.4 NC_005887.1 + 24208 0.75 0.101987
Target:  5'- gCACGACG-UCGGCGGCccGCGCUUcgccgguugcguacaGCGCg -3'
miRNA:   3'- -GUGCUGCgAGCUGCCG--CGCGAG---------------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 2477 0.75 0.103689
Target:  5'- gCGCuGACGCggaucaUCGACGGCGagcccggccUGCUCGUGCa -3'
miRNA:   3'- -GUG-CUGCG------AGCUGCCGC---------GCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 15098 0.75 0.106293
Target:  5'- gGCGACGCggGcCGGCGCGCgaugcagUUGCGCc -3'
miRNA:   3'- gUGCUGCGagCuGCCGCGCG-------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 21806 0.75 0.109559
Target:  5'- aCACGACGUcCG-CGGCGCuGCcgggCGCGCc -3'
miRNA:   3'- -GUGCUGCGaGCuGCCGCG-CGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 29505 0.74 0.111685
Target:  5'- gGCGGC-CUCGACGGCgggcGCGUuguagaacagcacgUCGCGCg -3'
miRNA:   3'- gUGCUGcGAGCUGCCG----CGCG--------------AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14996 0.74 0.112609
Target:  5'- -cCGACGCUCGuCuGCGCGCcgcUGCGCg -3'
miRNA:   3'- guGCUGCGAGCuGcCGCGCGa--GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39887 0.74 0.118948
Target:  5'- cCGCGucaGCGCcucgUCGACGGCGCcGUagCGCGCg -3'
miRNA:   3'- -GUGC---UGCG----AGCUGCCGCG-CGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39935 0.74 0.118948
Target:  5'- --gGGCGCgUCGACGaCGCGCaUCGCGUg -3'
miRNA:   3'- gugCUGCG-AGCUGCcGCGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 12628 0.74 0.120256
Target:  5'- gCGCGGCGCgugauccugcgacgCGACGGCGagugGCUgCGCGUg -3'
miRNA:   3'- -GUGCUGCGa-------------GCUGCCGCg---CGA-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 36037 0.74 0.121245
Target:  5'- -uCGGCGC-CGGCGaggcgcaaggccucGaCGCGCUCGCGCa -3'
miRNA:   3'- guGCUGCGaGCUGC--------------C-GCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 14062 0.74 0.122241
Target:  5'- cCACGACGCU--GC-GCGCGCUCgGCGUg -3'
miRNA:   3'- -GUGCUGCGAgcUGcCGCGCGAG-CGCG- -5'
28053 3' -60.4 NC_005887.1 + 26145 0.74 0.123582
Target:  5'- uCGCGGCGCUCGACGacguccucgucgauCGUGUcgCGCGCg -3'
miRNA:   3'- -GUGCUGCGAGCUGCc-------------GCGCGa-GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 39014 0.74 0.129083
Target:  5'- cCACcGCGCagUCGACGGCG-GCUUGCuGCg -3'
miRNA:   3'- -GUGcUGCG--AGCUGCCGCgCGAGCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 12554 0.73 0.132635
Target:  5'- gACGugGCgUCGACGGcCGCcgGCaUGCGCa -3'
miRNA:   3'- gUGCugCG-AGCUGCC-GCG--CGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 27023 0.73 0.132635
Target:  5'- uGCGcaAC-CUCGGCGaGCGCGCgacCGCGCa -3'
miRNA:   3'- gUGC--UGcGAGCUGC-CGCGCGa--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.