miRNA display CGI


Results 21 - 40 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 40007 0.66 0.392371
Target:  5'- gCAgGACG-UCG-CGGUGCGCaUCaugGCGCg -3'
miRNA:   3'- -GUgCUGCgAGCuGCCGCGCG-AG---CGCG- -5'
28053 3' -60.4 NC_005887.1 + 38853 0.66 0.428667
Target:  5'- gACGAUGCccuugcCGACGuCGUGCUCgaucaucaGCGCg -3'
miRNA:   3'- gUGCUGCGa-----GCUGCcGCGCGAG--------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 28586 0.66 0.410269
Target:  5'- uCACGGCGCUC--UGGaaauCGUcCUCGCGCc -3'
miRNA:   3'- -GUGCUGCGAGcuGCC----GCGcGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 26714 0.66 0.427736
Target:  5'- aCACGGCGCccugaUCGGCGaGCccggccgccugcuGCGCgacgcccgUGCGCu -3'
miRNA:   3'- -GUGCUGCG-----AGCUGC-CG-------------CGCGa-------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 34446 0.66 0.428667
Target:  5'- aGCGGuCGcCUCGAaguCGucuucguucGCGCgGCUCGCGCc -3'
miRNA:   3'- gUGCU-GC-GAGCU---GC---------CGCG-CGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 15423 0.66 0.392371
Target:  5'- aGCaGugGUucgUCGACGGCggccaGCGaCUCGgGCg -3'
miRNA:   3'- gUG-CugCG---AGCUGCCG-----CGC-GAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 4594 0.66 0.392371
Target:  5'- aACGACGa-CGGCaaguugGGCGgGCUCGUGg -3'
miRNA:   3'- gUGCUGCgaGCUG------CCGCgCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 13400 0.66 0.419407
Target:  5'- gCGCGGCGgacgUCGGCGGCaaGC-CGCuGCu -3'
miRNA:   3'- -GUGCUGCg---AGCUGCCGcgCGaGCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 33618 0.66 0.410269
Target:  5'- gCGCGGCGUggucuUCGAacuucccguaGcGCGCGCU-GCGCu -3'
miRNA:   3'- -GUGCUGCG-----AGCUg---------C-CGCGCGAgCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40658 0.66 0.428667
Target:  5'- cCGCGcagcuuGCGCUCGugcuCGGgGCGaucgaGCGCg -3'
miRNA:   3'- -GUGC------UGCGAGCu---GCCgCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 19355 0.66 0.428667
Target:  5'- aGCGACcgGCgUCGaucaGCGGCaacGCGCcaugcUCGCGCa -3'
miRNA:   3'- gUGCUG--CG-AGC----UGCCG---CGCG-----AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 9624 0.66 0.419407
Target:  5'- -cUGAUGCgCGAcCGGUG-GCUCGCGa -3'
miRNA:   3'- guGCUGCGaGCU-GCCGCgCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 7873 0.66 0.392371
Target:  5'- gGCGACaGCUUcuCGG-GCGCgagcCGCGCg -3'
miRNA:   3'- gUGCUG-CGAGcuGCCgCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 13979 0.66 0.401257
Target:  5'- cCGCGAaGC-CGuCGaCGCGUUCGUGCu -3'
miRNA:   3'- -GUGCUgCGaGCuGCcGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 34044 0.66 0.428667
Target:  5'- gCGCGuccaucGCGUUCGGauCGGUgacGCGCuUCGCGUa -3'
miRNA:   3'- -GUGC------UGCGAGCU--GCCG---CGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28772 0.66 0.427736
Target:  5'- aCGCGGCcuccuucGCgUCGuCGGCcUGCUCGgGCg -3'
miRNA:   3'- -GUGCUG-------CG-AGCuGCCGcGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 4114 0.66 0.419407
Target:  5'- -uCGAgCGCUCGAccauccCGGCcacGCGCaaggcugCGCGCg -3'
miRNA:   3'- guGCU-GCGAGCU------GCCG---CGCGa------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 12579 0.66 0.401257
Target:  5'- gCGCGACGCggCGAUccucGCGaucaGCUCGCcggGCa -3'
miRNA:   3'- -GUGCUGCGa-GCUGc---CGCg---CGAGCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 8391 0.66 0.383614
Target:  5'- gCGCGACGaagCGACaaGGCGCGUggGCcgaGCa -3'
miRNA:   3'- -GUGCUGCga-GCUG--CCGCGCGagCG---CG- -5'
28053 3' -60.4 NC_005887.1 + 14379 0.66 0.383614
Target:  5'- -uCGAguCGC-CGcuCGGCGCGCgCGCGUa -3'
miRNA:   3'- guGCU--GCGaGCu-GCCGCGCGaGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.