miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 42011 0.67 0.366495
Target:  5'- cCACGuCGagugUCGccGCGGCGCGCgauGCGUa -3'
miRNA:   3'- -GUGCuGCg---AGC--UGCCGCGCGag-CGCG- -5'
28053 3' -60.4 NC_005887.1 + 41960 0.76 0.078539
Target:  5'- uCGCGugGUgCGugcGCGGCGCGCUCGCc- -3'
miRNA:   3'- -GUGCugCGaGC---UGCCGCGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 41834 0.72 0.160119
Target:  5'- gGCGACGaccacgcgaUCuGGCGGCGCcugauGCUCGUGCc -3'
miRNA:   3'- gUGCUGCg--------AG-CUGCCGCG-----CGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41818 0.71 0.208266
Target:  5'- gCGCGGCGCgCGGCGGC-CGa-CGCGUu -3'
miRNA:   3'- -GUGCUGCGaGCUGCCGcGCgaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41709 0.68 0.289005
Target:  5'- gCGCGuGCGCUCG-CcGCGCGCuuucaUCGCGg -3'
miRNA:   3'- -GUGC-UGCGAGCuGcCGCGCG-----AGCGCg -5'
28053 3' -60.4 NC_005887.1 + 41539 0.69 0.275141
Target:  5'- cCGCGAgGCgcu-CGGCGCGCaCGCGa -3'
miRNA:   3'- -GUGCUgCGagcuGCCGCGCGaGCGCg -5'
28053 3' -60.4 NC_005887.1 + 41436 0.66 0.428667
Target:  5'- aGCG-C-CUCGugGGCuauGCGCUgcucggcacgcCGCGCg -3'
miRNA:   3'- gUGCuGcGAGCugCCG---CGCGA-----------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41270 0.67 0.358134
Target:  5'- aAUGGCGCcgUCGACcugcgcacgGGCGCGCUgcugccgcCGgGCa -3'
miRNA:   3'- gUGCUGCG--AGCUG---------CCGCGCGA--------GCgCG- -5'
28053 3' -60.4 NC_005887.1 + 41104 0.67 0.333863
Target:  5'- uGCGACGUuuUCG-CGuGCugaGCGC-CGCGCa -3'
miRNA:   3'- gUGCUGCG--AGCuGC-CG---CGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40980 0.69 0.282006
Target:  5'- gCGCGACGCgcggGACaGGauguaGCGCUCGaGCg -3'
miRNA:   3'- -GUGCUGCGag--CUG-CCg----CGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 40846 0.67 0.374988
Target:  5'- gUACG-UGUUcCGcACGGcCGCGC-CGCGCg -3'
miRNA:   3'- -GUGCuGCGA-GC-UGCC-GCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40754 0.76 0.078539
Target:  5'- gGCGAuCGC-CGuuGGCGCGC-CGCGCg -3'
miRNA:   3'- gUGCU-GCGaGCugCCGCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40658 0.66 0.428667
Target:  5'- cCGCGcagcuuGCGCUCGugcuCGGgGCGaucgaGCGCg -3'
miRNA:   3'- -GUGC------UGCGAGCu---GCCgCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 40565 0.72 0.160119
Target:  5'- nCACGA-GUUCu-CGGCGCGCUCGaGCa -3'
miRNA:   3'- -GUGCUgCGAGcuGCCGCGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 40528 0.85 0.019424
Target:  5'- aCGCGGCGCgcggcagcgaCGACGGUcugGCGCUCGCGCa -3'
miRNA:   3'- -GUGCUGCGa---------GCUGCCG---CGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40503 0.68 0.29614
Target:  5'- --aGugGUcCGAgucCGGCGCGUUCGUGUc -3'
miRNA:   3'- gugCugCGaGCU---GCCGCGCGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40496 0.68 0.289005
Target:  5'- gGCGugGCgCGACGuCGUGUUCG-GCa -3'
miRNA:   3'- gUGCugCGaGCUGCcGCGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 40121 0.73 0.140011
Target:  5'- gCAgGACGCcuacagCGuGCGGUGCGCgcugCGCGCc -3'
miRNA:   3'- -GUgCUGCGa-----GC-UGCCGCGCGa---GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40007 0.66 0.392371
Target:  5'- gCAgGACG-UCG-CGGUGCGCaUCaugGCGCg -3'
miRNA:   3'- -GUgCUGCgAGCuGCCGCGCG-AG---CGCG- -5'
28053 3' -60.4 NC_005887.1 + 39935 0.74 0.118948
Target:  5'- --gGGCGCgUCGACGaCGCGCaUCGCGUg -3'
miRNA:   3'- gugCUGCG-AGCUGCcGCGCG-AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.