miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 5' -54.5 NC_005887.1 + 17324 0.77 0.147859
Target:  5'- cGCGUGCUGCACuuCCGcGAUGcuGAcGCGCa -3'
miRNA:   3'- -CGCACGACGUGu-GGUaCUAC--CU-CGCG- -5'
28053 5' -54.5 NC_005887.1 + 32752 0.71 0.393485
Target:  5'- cGCGUGCgcgccggcGCGCGCCAUGcagccGGcucguGCGCa -3'
miRNA:   3'- -CGCACGa-------CGUGUGGUACua---CCu----CGCG- -5'
28053 5' -54.5 NC_005887.1 + 24117 0.7 0.452015
Target:  5'- cCGUGCUGCGCGugUCGUGcgguGUGaAGCGCc -3'
miRNA:   3'- cGCACGACGUGU--GGUAC----UACcUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 7212 0.69 0.462228
Target:  5'- cGCGUGCgcagGCGCugUcgGcGUcGGGCGCa -3'
miRNA:   3'- -CGCACGa---CGUGugGuaC-UAcCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 40143 0.69 0.503158
Target:  5'- uGCGcGCUGCGCGCCGcgcucgccgcgugUGAgcu-GCGCg -3'
miRNA:   3'- -CGCaCGACGUGUGGU-------------ACUaccuCGCG- -5'
28053 5' -54.5 NC_005887.1 + 7448 0.68 0.567796
Target:  5'- gGCGUGCgcgucgugaucgGCAUGCCGUucgcGAacGAGCGCu -3'
miRNA:   3'- -CGCACGa-----------CGUGUGGUA----CUacCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 28087 0.68 0.57003
Target:  5'- ---cGCUGCAUGCCGUuuaccGGGGCGUg -3'
miRNA:   3'- cgcaCGACGUGUGGUAcua--CCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 1014 0.67 0.60376
Target:  5'- cGCGcGCUGUACACCGgcuUGaAGCGg -3'
miRNA:   3'- -CGCaCGACGUGUGGUacuACcUCGCg -5'
28053 5' -54.5 NC_005887.1 + 746 0.67 0.615068
Target:  5'- -gGUGCUGC-CGCCAUuGcUGGGGUaucggGCa -3'
miRNA:   3'- cgCACGACGuGUGGUA-CuACCUCG-----CG- -5'
28053 5' -54.5 NC_005887.1 + 22426 0.66 0.637721
Target:  5'- uCGUGCUGCuguuCugCAUG-UGGAuUGCc -3'
miRNA:   3'- cGCACGACGu---GugGUACuACCUcGCG- -5'
28053 5' -54.5 NC_005887.1 + 26173 0.66 0.65357
Target:  5'- uCGUGUcGCGCGCgAUGAUcggguagaugaaaacGGGGCGg -3'
miRNA:   3'- cGCACGaCGUGUGgUACUA---------------CCUCGCg -5'
28053 5' -54.5 NC_005887.1 + 38219 0.66 0.671631
Target:  5'- cGCGcGCagccuUGCGCgugGCCggGAUGGucgAGCGCu -3'
miRNA:   3'- -CGCaCG-----ACGUG---UGGuaCUACC---UCGCG- -5'
28053 5' -54.5 NC_005887.1 + 37414 0.81 0.082795
Target:  5'- cGCGacUGcCUGCACGCCAggugcgGAgUGGAGCGCg -3'
miRNA:   3'- -CGC--AC-GACGUGUGGUa-----CU-ACCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.