miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 5' -54.5 NC_005887.1 + 29608 0.68 0.53678
Target:  5'- cGCGuUGCaGCGCGgCGcGAUcGAGCGCa -3'
miRNA:   3'- -CGC-ACGaCGUGUgGUaCUAcCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 30341 0.71 0.384218
Target:  5'- gGCGUGC-GUGCGCCG-GAUGucugcaacguGGGCGCg -3'
miRNA:   3'- -CGCACGaCGUGUGGUaCUAC----------CUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 30620 0.71 0.402897
Target:  5'- uGCGUGCauucgUGCGCGCCGUGc----GCGCg -3'
miRNA:   3'- -CGCACG-----ACGUGUGGUACuaccuCGCG- -5'
28053 5' -54.5 NC_005887.1 + 30900 0.67 0.625259
Target:  5'- cGCGaGCUGCGCGuugcgauCCAUGAUcgcGGccuguuGCGCu -3'
miRNA:   3'- -CGCaCGACGUGU-------GGUACUA---CCu-----CGCG- -5'
28053 5' -54.5 NC_005887.1 + 31457 0.66 0.671631
Target:  5'- uGCGccgGCUGCagguGCACCGacagGAUgugcucGGGGCGUa -3'
miRNA:   3'- -CGCa--CGACG----UGUGGUa---CUA------CCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 32752 0.71 0.393485
Target:  5'- cGCGUGCgcgccggcGCGCGCCAUGcagccGGcucguGCGCa -3'
miRNA:   3'- -CGCACGa-------CGUGUGGUACua---CCu----CGCG- -5'
28053 5' -54.5 NC_005887.1 + 36873 0.69 0.462228
Target:  5'- -gGUGCUGCGCcaucgGCCugcgucGUGGUGGAuGCGg -3'
miRNA:   3'- cgCACGACGUG-----UGG------UACUACCU-CGCg -5'
28053 5' -54.5 NC_005887.1 + 37187 0.68 0.574505
Target:  5'- cGCGUGCcaucagcaucagcgGCGCGCCGacgucgGGcAGCGCg -3'
miRNA:   3'- -CGCACGa-------------CGUGUGGUacua--CC-UCGCG- -5'
28053 5' -54.5 NC_005887.1 + 37414 0.81 0.082795
Target:  5'- cGCGacUGcCUGCACGCCAggugcgGAgUGGAGCGCg -3'
miRNA:   3'- -CGC--AC-GACGUGUGGUa-----CU-ACCUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 38219 0.66 0.671631
Target:  5'- cGCGcGCagccuUGCGCgugGCCggGAUGGucgAGCGCu -3'
miRNA:   3'- -CGCaCG-----ACGUG---UGGuaCUACC---UCGCG- -5'
28053 5' -54.5 NC_005887.1 + 40143 0.69 0.503158
Target:  5'- uGCGcGCUGCGCGCCGcgcucgccgcgugUGAgcu-GCGCg -3'
miRNA:   3'- -CGCaCGACGUGUGGU-------------ACUaccuCGCG- -5'
28053 5' -54.5 NC_005887.1 + 40938 0.7 0.441927
Target:  5'- cGCGUucgucuugccGCUGCcgaGCGggcCCAUGAUGaacGAGCGCg -3'
miRNA:   3'- -CGCA----------CGACG---UGU---GGUACUAC---CUCGCG- -5'
28053 5' -54.5 NC_005887.1 + 41398 0.67 0.60376
Target:  5'- uCGUGCUGCACGCCuucgccGAagcacucGGGGCa- -3'
miRNA:   3'- cGCACGACGUGUGGua----CUa------CCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.