Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 746 | 0.67 | 0.615068 |
Target: 5'- -gGUGCUGC-CGCCAUuGcUGGGGUaucggGCa -3' miRNA: 3'- cgCACGACGuGUGGUA-CuACCUCG-----CG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 1014 | 0.67 | 0.60376 |
Target: 5'- cGCGcGCUGUACACCGgcuUGaAGCGg -3' miRNA: 3'- -CGCaCGACGUGUGGUacuACcUCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 1670 | 0.73 | 0.284704 |
Target: 5'- cCGUGCgcGCGCGCCAggugcagGAUGGuGCGg -3' miRNA: 3'- cGCACGa-CGUGUGGUa------CUACCuCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 1830 | 0.66 | 0.660352 |
Target: 5'- cGC-UGCcGCGCGCCGcgUGGUGGA-UGCc -3' miRNA: 3'- -CGcACGaCGUGUGGU--ACUACCUcGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 5445 | 0.66 | 0.671631 |
Target: 5'- aCGUGUUcGUGaaaGCCGUGAUGGAugauGUGCc -3' miRNA: 3'- cGCACGA-CGUg--UGGUACUACCU----CGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 7212 | 0.69 | 0.462228 |
Target: 5'- cGCGUGCgcagGCGCugUcgGcGUcGGGCGCa -3' miRNA: 3'- -CGCACGa---CGUGugGuaC-UAcCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 7448 | 0.68 | 0.567796 |
Target: 5'- gGCGUGCgcgucgugaucgGCAUGCCGUucgcGAacGAGCGCu -3' miRNA: 3'- -CGCACGa-----------CGUGUGGUA----CUacCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 12745 | 0.73 | 0.299769 |
Target: 5'- gGCGUGaaccaGUACACCcgGAagUGGcAGCGCa -3' miRNA: 3'- -CGCACga---CGUGUGGuaCU--ACC-UCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 14130 | 0.66 | 0.659222 |
Target: 5'- cGCGcGCUGCucaaaacCGCCGagacgcgcggcgcUGAUGcGGCGCa -3' miRNA: 3'- -CGCaCGACGu------GUGGU-------------ACUACcUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 14506 | 0.71 | 0.384218 |
Target: 5'- ---aGCUGCGCACCGUucccGAaGGGGCGa -3' miRNA: 3'- cgcaCGACGUGUGGUA----CUaCCUCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 14800 | 1.13 | 0.000433 |
Target: 5'- uGCGUGCUGCACACCAUGAUGGAGCGCc -3' miRNA: 3'- -CGCACGACGUGUGGUACUACCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 17324 | 0.77 | 0.147859 |
Target: 5'- cGCGUGCUGCACuuCCGcGAUGcuGAcGCGCa -3' miRNA: 3'- -CGCACGACGUGu-GGUaCUAC--CU-CGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 18952 | 0.66 | 0.637721 |
Target: 5'- cGCGcUGCUGCGgcUGCCAgc--GGcAGCGCg -3' miRNA: 3'- -CGC-ACGACGU--GUGGUacuaCC-UCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 22426 | 0.66 | 0.637721 |
Target: 5'- uCGUGCUGCuguuCugCAUG-UGGAuUGCc -3' miRNA: 3'- cGCACGACGu---GugGUACuACCUcGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 23001 | 0.68 | 0.547796 |
Target: 5'- cGCGUcuGCUGCGCGagCAUGGUcagcuuaucGAGCGCc -3' miRNA: 3'- -CGCA--CGACGUGUg-GUACUAc--------CUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 24117 | 0.7 | 0.452015 |
Target: 5'- cCGUGCUGCGCGugUCGUGcgguGUGaAGCGCc -3' miRNA: 3'- cGCACGACGUGU--GGUAC----UACcUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 26173 | 0.66 | 0.65357 |
Target: 5'- uCGUGUcGCGCGCgAUGAUcggguagaugaaaacGGGGCGg -3' miRNA: 3'- cGCACGaCGUGUGgUACUA---------------CCUCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 26466 | 0.66 | 0.69406 |
Target: 5'- cGCGU-CgaGCGCACCGagcUGcUGGuGCGCc -3' miRNA: 3'- -CGCAcGa-CGUGUGGU---ACuACCuCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 28087 | 0.68 | 0.57003 |
Target: 5'- ---cGCUGCAUGCCGUuuaccGGGGCGUg -3' miRNA: 3'- cgcaCGACGUGUGGUAcua--CCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 28327 | 0.66 | 0.671631 |
Target: 5'- uGCGccgGCgGCGCGCCGgcgGuugcGGAGgCGCg -3' miRNA: 3'- -CGCa--CGaCGUGUGGUa--Cua--CCUC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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