Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28053 | 5' | -54.5 | NC_005887.1 | + | 36873 | 0.69 | 0.462228 |
Target: 5'- -gGUGCUGCGCcaucgGCCugcgucGUGGUGGAuGCGg -3' miRNA: 3'- cgCACGACGUG-----UGG------UACUACCU-CGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 7212 | 0.69 | 0.462228 |
Target: 5'- cGCGUGCgcagGCGCugUcgGcGUcGGGCGCa -3' miRNA: 3'- -CGCACGa---CGUGugGuaC-UAcCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 24117 | 0.7 | 0.452015 |
Target: 5'- cCGUGCUGCGCGugUCGUGcgguGUGaAGCGCc -3' miRNA: 3'- cGCACGACGUGU--GGUAC----UACcUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 40938 | 0.7 | 0.441927 |
Target: 5'- cGCGUucgucuugccGCUGCcgaGCGggcCCAUGAUGaacGAGCGCg -3' miRNA: 3'- -CGCA----------CGACG---UGU---GGUACUAC---CUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 30620 | 0.71 | 0.402897 |
Target: 5'- uGCGUGCauucgUGCGCGCCGUGc----GCGCg -3' miRNA: 3'- -CGCACG-----ACGUGUGGUACuaccuCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 32752 | 0.71 | 0.393485 |
Target: 5'- cGCGUGCgcgccggcGCGCGCCAUGcagccGGcucguGCGCa -3' miRNA: 3'- -CGCACGa-------CGUGUGGUACua---CCu----CGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 30341 | 0.71 | 0.384218 |
Target: 5'- gGCGUGC-GUGCGCCG-GAUGucugcaacguGGGCGCg -3' miRNA: 3'- -CGCACGaCGUGUGGUaCUAC----------CUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 14506 | 0.71 | 0.384218 |
Target: 5'- ---aGCUGCGCACCGUucccGAaGGGGCGa -3' miRNA: 3'- cgcaCGACGUGUGGUA----CUaCCUCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 12745 | 0.73 | 0.299769 |
Target: 5'- gGCGUGaaccaGUACACCcgGAagUGGcAGCGCa -3' miRNA: 3'- -CGCACga---CGUGUGGuaCU--ACC-UCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 1670 | 0.73 | 0.284704 |
Target: 5'- cCGUGCgcGCGCGCCAggugcagGAUGGuGCGg -3' miRNA: 3'- cGCACGa-CGUGUGGUa------CUACCuCGCg -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 17324 | 0.77 | 0.147859 |
Target: 5'- cGCGUGCUGCACuuCCGcGAUGcuGAcGCGCa -3' miRNA: 3'- -CGCACGACGUGu-GGUaCUAC--CU-CGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 37414 | 0.81 | 0.082795 |
Target: 5'- cGCGacUGcCUGCACGCCAggugcgGAgUGGAGCGCg -3' miRNA: 3'- -CGC--AC-GACGUGUGGUa-----CU-ACCUCGCG- -5' |
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28053 | 5' | -54.5 | NC_005887.1 | + | 14800 | 1.13 | 0.000433 |
Target: 5'- uGCGUGCUGCACACCAUGAUGGAGCGCc -3' miRNA: 3'- -CGCACGACGUGUGGUACUACCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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