Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28054 | 3' | -54 | NC_005887.1 | + | 14274 | 1.11 | 0.000687 |
Target: 5'- aACGGCAUGCAGCGUGACCGAACAUGGg -3' miRNA: 3'- -UGCCGUACGUCGCACUGGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26401 | 0.79 | 0.134395 |
Target: 5'- aGCGGCGUGCGgcGCGUGGCCGGcGCAUc- -3' miRNA: 3'- -UGCCGUACGU--CGCACUGGCU-UGUAcc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 1713 | 0.73 | 0.328264 |
Target: 5'- cGCGGCAUGCAgcucacguucGCGUGGCUcAACGaGGu -3' miRNA: 3'- -UGCCGUACGU----------CGCACUGGcUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 30338 | 0.71 | 0.398772 |
Target: 5'- aGCGGCGUGCGuGCGccggaUGuCUGcAACGUGGg -3' miRNA: 3'- -UGCCGUACGU-CGC-----ACuGGC-UUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 11519 | 0.71 | 0.398772 |
Target: 5'- cGCGGCAUGCAGaugGACguCGAAC-UGGc -3' miRNA: 3'- -UGCCGUACGUCgcaCUG--GCUUGuACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 6480 | 0.71 | 0.427599 |
Target: 5'- cGCGGCGUcGCGGUGUcuGCCGAGCGc-- -3' miRNA: 3'- -UGCCGUA-CGUCGCAc-UGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 14344 | 0.71 | 0.427599 |
Target: 5'- cGCGGCGaucgugaaGCAGCGUG-CCGGGCAc-- -3' miRNA: 3'- -UGCCGUa-------CGUCGCACuGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 28038 | 0.7 | 0.457624 |
Target: 5'- cACuGCGU-CGGCGUGAUCGAGCA-GGc -3' miRNA: 3'- -UGcCGUAcGUCGCACUGGCUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38180 | 0.7 | 0.457624 |
Target: 5'- gGCGGUGUGCAGCaUGGCCGGcuCAa-- -3' miRNA: 3'- -UGCCGUACGUCGcACUGGCUu-GUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 31912 | 0.7 | 0.467881 |
Target: 5'- -aGGCAUGCugcuGCaaGAuCCGGGCGUGGu -3' miRNA: 3'- ugCCGUACGu---CGcaCU-GGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26901 | 0.7 | 0.478255 |
Target: 5'- cGCGGuCAUcGCGGCGacgucguccgguUGACCGAACAc-- -3' miRNA: 3'- -UGCC-GUA-CGUCGC------------ACUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 34984 | 0.69 | 0.531691 |
Target: 5'- cGCGGCGuugucgucggucUGCAGCGcGAUCGAAUAc-- -3' miRNA: 3'- -UGCCGU------------ACGUCGCaCUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 34938 | 0.69 | 0.553678 |
Target: 5'- -aGGCG-GCGGCGgGugCGAcCGUGGc -3' miRNA: 3'- ugCCGUaCGUCGCaCugGCUuGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 1485 | 0.68 | 0.564774 |
Target: 5'- gACGGCGUGCGGCGcucgcgcGGCgCGGcCGUGcGg -3' miRNA: 3'- -UGCCGUACGUCGCa------CUG-GCUuGUAC-C- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38219 | 0.68 | 0.575928 |
Target: 5'- cGCGcGCAgccuUGC-GCGUGGCCGGG-AUGGu -3' miRNA: 3'- -UGC-CGU----ACGuCGCACUGGCUUgUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 13623 | 0.68 | 0.575928 |
Target: 5'- cGCGGCGcGCGGCGgccgcacucaGCCGAGCAg-- -3' miRNA: 3'- -UGCCGUaCGUCGCac--------UGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 7446 | 0.68 | 0.58713 |
Target: 5'- cUGGCGUGCGcGuCGUGAUCG-GCAUGc -3' miRNA: 3'- uGCCGUACGU-C-GCACUGGCuUGUACc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 7188 | 0.68 | 0.596121 |
Target: 5'- -aGGCcgagaucGUGCAGCGUGAcggccgcCCGucCGUGGc -3' miRNA: 3'- ugCCG-------UACGUCGCACU-------GGCuuGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 29021 | 0.68 | 0.609644 |
Target: 5'- cGCGGCGagauccgcgaUGCggccGGCGUuGCCGAACGccUGGc -3' miRNA: 3'- -UGCCGU----------ACG----UCGCAcUGGCUUGU--ACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38032 | 0.68 | 0.609644 |
Target: 5'- uGCGGCAUguccgGCAGC-UGGCCGGccucgGCGaGGa -3' miRNA: 3'- -UGCCGUA-----CGUCGcACUGGCU-----UGUaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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