Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28054 | 3' | -54 | NC_005887.1 | + | 1713 | 0.73 | 0.328264 |
Target: 5'- cGCGGCAUGCAgcucacguucGCGUGGCUcAACGaGGu -3' miRNA: 3'- -UGCCGUACGU----------CGCACUGGcUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 32421 | 0.66 | 0.721717 |
Target: 5'- gUGGCcgGCGGCGaugUGGCCGGcgGCGa-- -3' miRNA: 3'- uGCCGuaCGUCGC---ACUGGCU--UGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 26204 | 0.66 | 0.721717 |
Target: 5'- aACGGg--GCGGCgGUGGCCGGccuGCAgcUGGc -3' miRNA: 3'- -UGCCguaCGUCG-CACUGGCU---UGU--ACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 7904 | 0.66 | 0.721717 |
Target: 5'- cCGGCGacgaucUGCAGUaacgGACUGAcACAUGGc -3' miRNA: 3'- uGCCGU------ACGUCGca--CUGGCU-UGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 2015 | 0.66 | 0.721717 |
Target: 5'- cGCGGCAUGCAGgGcaagaaguucGACUGGAuCAaGGu -3' miRNA: 3'- -UGCCGUACGUCgCa---------CUGGCUU-GUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 1932 | 0.66 | 0.710733 |
Target: 5'- gGCGGCGU-CAuGCGUGACgGcGAUcgGUGGg -3' miRNA: 3'- -UGCCGUAcGU-CGCACUGgC-UUG--UACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 24618 | 0.66 | 0.699668 |
Target: 5'- uGCGGCc-GCAcGCGUGGUCGAACAg-- -3' miRNA: 3'- -UGCCGuaCGU-CGCACUGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 963 | 0.66 | 0.688534 |
Target: 5'- -aGGCGUGCAGCacgagGUGAUCGccGACAc-- -3' miRNA: 3'- ugCCGUACGUCG-----CACUGGC--UUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 42027 | 0.67 | 0.677343 |
Target: 5'- cGCGGCGcGCGauGCGUacaaGgCGGACAUGGa -3' miRNA: 3'- -UGCCGUaCGU--CGCAc---UgGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 14696 | 0.67 | 0.654836 |
Target: 5'- -gGGCucgucGCGGCGggcgGGCCGGGCGcGGc -3' miRNA: 3'- ugCCGua---CGUCGCa---CUGGCUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 7446 | 0.68 | 0.58713 |
Target: 5'- cUGGCGUGCGcGuCGUGAUCG-GCAUGc -3' miRNA: 3'- uGCCGUACGU-C-GCACUGGCuUGUACc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 14344 | 0.71 | 0.427599 |
Target: 5'- cGCGGCGaucgugaaGCAGCGUG-CCGGGCAc-- -3' miRNA: 3'- -UGCCGUa-------CGUCGCACuGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 28038 | 0.7 | 0.457624 |
Target: 5'- cACuGCGU-CGGCGUGAUCGAGCA-GGc -3' miRNA: 3'- -UGcCGUAcGUCGCACUGGCUUGUaCC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38180 | 0.7 | 0.457624 |
Target: 5'- gGCGGUGUGCAGCaUGGCCGGcuCAa-- -3' miRNA: 3'- -UGCCGUACGUCGcACUGGCUu-GUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 31912 | 0.7 | 0.467881 |
Target: 5'- -aGGCAUGCugcuGCaaGAuCCGGGCGUGGu -3' miRNA: 3'- ugCCGUACGu---CGcaCU-GGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 1485 | 0.68 | 0.564774 |
Target: 5'- gACGGCGUGCGGCGcucgcgcGGCgCGGcCGUGcGg -3' miRNA: 3'- -UGCCGUACGUCGCa------CUG-GCUuGUAC-C- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 13623 | 0.68 | 0.575928 |
Target: 5'- cGCGGCGcGCGGCGgccgcacucaGCCGAGCAg-- -3' miRNA: 3'- -UGCCGUaCGUCGCac--------UGGCUUGUacc -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 38219 | 0.68 | 0.575928 |
Target: 5'- cGCGcGCAgccuUGC-GCGUGGCCGGG-AUGGu -3' miRNA: 3'- -UGC-CGU----ACGuCGCACUGGCUUgUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 14274 | 1.11 | 0.000687 |
Target: 5'- aACGGCAUGCAGCGUGACCGAACAUGGg -3' miRNA: 3'- -UGCCGUACGUCGCACUGGCUUGUACC- -5' |
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28054 | 3' | -54 | NC_005887.1 | + | 24110 | 0.66 | 0.710733 |
Target: 5'- gACGGUGccCGGCGUGGCCGAGgCGa-- -3' miRNA: 3'- -UGCCGUacGUCGCACUGGCUU-GUacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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