miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 3' -54 NC_005887.1 + 25289 0.67 0.654836
Target:  5'- aGCGGCAUGaCGGCGUccGcCCaAGCGUGc -3'
miRNA:   3'- -UGCCGUAC-GUCGCA--CuGGcUUGUACc -5'
28054 3' -54 NC_005887.1 + 24110 0.66 0.710733
Target:  5'- gACGGUGccCGGCGUGGCCGAGgCGa-- -3'
miRNA:   3'- -UGCCGUacGUCGCACUGGCUU-GUacc -5'
28054 3' -54 NC_005887.1 + 3937 0.66 0.732606
Target:  5'- uACaGCGUugccuaacGCAGCGcacUGACCGAACcgGa -3'
miRNA:   3'- -UGcCGUA--------CGUCGC---ACUGGCUUGuaCc -5'
28054 3' -54 NC_005887.1 + 34984 0.69 0.531691
Target:  5'- cGCGGCGuugucgucggucUGCAGCGcGAUCGAAUAc-- -3'
miRNA:   3'- -UGCCGU------------ACGUCGCaCUGGCUUGUacc -5'
28054 3' -54 NC_005887.1 + 7188 0.68 0.596121
Target:  5'- -aGGCcgagaucGUGCAGCGUGAcggccgcCCGucCGUGGc -3'
miRNA:   3'- ugCCG-------UACGUCGCACU-------GGCuuGUACC- -5'
28054 3' -54 NC_005887.1 + 38032 0.68 0.609644
Target:  5'- uGCGGCAUguccgGCAGC-UGGCCGGccucgGCGaGGa -3'
miRNA:   3'- -UGCCGUA-----CGUCGcACUGGCU-----UGUaCC- -5'
28054 3' -54 NC_005887.1 + 14274 1.11 0.000687
Target:  5'- aACGGCAUGCAGCGUGACCGAACAUGGg -3'
miRNA:   3'- -UGCCGUACGUCGCACUGGCUUGUACC- -5'
28054 3' -54 NC_005887.1 + 30338 0.71 0.398772
Target:  5'- aGCGGCGUGCGuGCGccggaUGuCUGcAACGUGGg -3'
miRNA:   3'- -UGCCGUACGU-CGC-----ACuGGC-UUGUACC- -5'
28054 3' -54 NC_005887.1 + 6480 0.71 0.427599
Target:  5'- cGCGGCGUcGCGGUGUcuGCCGAGCGc-- -3'
miRNA:   3'- -UGCCGUA-CGUCGCAc-UGGCUUGUacc -5'
28054 3' -54 NC_005887.1 + 34938 0.69 0.553678
Target:  5'- -aGGCG-GCGGCGgGugCGAcCGUGGc -3'
miRNA:   3'- ugCCGUaCGUCGCaCugGCUuGUACC- -5'
28054 3' -54 NC_005887.1 + 21035 0.67 0.632241
Target:  5'- uGCGGUcgGCgcggugGGCGUGcCCguGAAUGUGGg -3'
miRNA:   3'- -UGCCGuaCG------UCGCACuGG--CUUGUACC- -5'
28054 3' -54 NC_005887.1 + 11519 0.71 0.398772
Target:  5'- cGCGGCAUGCAGaugGACguCGAAC-UGGc -3'
miRNA:   3'- -UGCCGUACGUCgcaCUG--GCUUGuACC- -5'
28054 3' -54 NC_005887.1 + 38642 0.67 0.620937
Target:  5'- cGCGGUcgGC-GCGcGGCuCGAcgGCGUGGu -3'
miRNA:   3'- -UGCCGuaCGuCGCaCUG-GCU--UGUACC- -5'
28054 3' -54 NC_005887.1 + 26901 0.7 0.478255
Target:  5'- cGCGGuCAUcGCGGCGacgucguccgguUGACCGAACAc-- -3'
miRNA:   3'- -UGCC-GUA-CGUCGC------------ACUGGCUUGUacc -5'
28054 3' -54 NC_005887.1 + 26401 0.79 0.134395
Target:  5'- aGCGGCGUGCGgcGCGUGGCCGGcGCAUc- -3'
miRNA:   3'- -UGCCGUACGU--CGCACUGGCU-UGUAcc -5'
28054 3' -54 NC_005887.1 + 29021 0.68 0.609644
Target:  5'- cGCGGCGagauccgcgaUGCggccGGCGUuGCCGAACGccUGGc -3'
miRNA:   3'- -UGCCGU----------ACG----UCGCAcUGGCUUGU--ACC- -5'
28054 3' -54 NC_005887.1 + 39279 0.67 0.673976
Target:  5'- uCGGCGuucagcgccUGCAggaucuucGCGUcgucguucgucauuGGCCGAGCAUGGc -3'
miRNA:   3'- uGCCGU---------ACGU--------CGCA--------------CUGGCUUGUACC- -5'
28054 3' -54 NC_005887.1 + 2015 0.66 0.721717
Target:  5'- cGCGGCAUGCAGgGcaagaaguucGACUGGAuCAaGGu -3'
miRNA:   3'- -UGCCGUACGUCgCa---------CUGGCUU-GUaCC- -5'
28054 3' -54 NC_005887.1 + 1932 0.66 0.710733
Target:  5'- gGCGGCGU-CAuGCGUGACgGcGAUcgGUGGg -3'
miRNA:   3'- -UGCCGUAcGU-CGCACUGgC-UUG--UACC- -5'
28054 3' -54 NC_005887.1 + 24618 0.66 0.699668
Target:  5'- uGCGGCc-GCAcGCGUGGUCGAACAg-- -3'
miRNA:   3'- -UGCCGuaCGU-CGCACUGGCUUGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.