miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 5' -58.3 NC_005887.1 + 986 0.66 0.461028
Target:  5'- gGUCUGCUCGAacgcuUCcCGgCGGCGCGc- -3'
miRNA:   3'- gCGGACGAGCU-----AGuGCgGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 1131 0.66 0.481152
Target:  5'- uGUCgaGCUCGGUCACGggcacgaCGACGCGc- -3'
miRNA:   3'- gCGGa-CGAGCUAGUGCg------GCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 1581 0.7 0.260496
Target:  5'- cCGCCgGCUCGGcgGCGCgCGGCGCGc- -3'
miRNA:   3'- -GCGGaCGAGCUagUGCG-GCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 1782 0.66 0.501694
Target:  5'- -aCUUGCUCGAgCGCGCCGagaacucguGCGCGa- -3'
miRNA:   3'- gcGGACGAGCUaGUGCGGC---------UGCGUca -5'
28054 5' -58.3 NC_005887.1 + 3275 0.66 0.461028
Target:  5'- uCGCC-GCgauggauuccaUGAUCACGCCGgcgACGCAGc -3'
miRNA:   3'- -GCGGaCGa----------GCUAGUGCGGC---UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 4230 0.69 0.334248
Target:  5'- gGCgUGCU-GcUCGCGCCGACGCu-- -3'
miRNA:   3'- gCGgACGAgCuAGUGCGGCUGCGuca -5'
28054 5' -58.3 NC_005887.1 + 4336 0.69 0.326228
Target:  5'- uGCCgcagGaacUGAUCgACGCCGGCGCGGa -3'
miRNA:   3'- gCGGa---Cga-GCUAG-UGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 4621 0.66 0.461028
Target:  5'- uCGCCgcgGCgcCGGUgGcCGCCGGCGCGa- -3'
miRNA:   3'- -GCGGa--CGa-GCUAgU-GCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 5160 0.66 0.481152
Target:  5'- aCGCCgaGCUgaaGGaCGCcgaGCCGACGCAGg -3'
miRNA:   3'- -GCGGa-CGAg--CUaGUG---CGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 6510 0.68 0.34241
Target:  5'- cCGCagGCgauGAUCuACGCCGACGCGGc -3'
miRNA:   3'- -GCGgaCGag-CUAG-UGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 8596 0.67 0.403494
Target:  5'- gCGCCagaUGCUCGugaAgGCCGGCGCGc- -3'
miRNA:   3'- -GCGG---ACGAGCuagUgCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 8933 0.69 0.318352
Target:  5'- uCGUCUGCUCGGUCGCGguaUCuACGCAc- -3'
miRNA:   3'- -GCGGACGAGCUAGUGC---GGcUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 9592 0.68 0.350716
Target:  5'- cCGgCUGCaUgGcgCGCGCCGGCGCGc- -3'
miRNA:   3'- -GCgGACG-AgCuaGUGCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 9873 0.66 0.481152
Target:  5'- uGCCUacuacaacGagaUCGAUCcgcACGCCG-CGCAGUg -3'
miRNA:   3'- gCGGA--------Cg--AGCUAG---UGCGGCuGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 10459 0.66 0.451133
Target:  5'- uGCCUGaC-CGG-CugGCCGACGCc-- -3'
miRNA:   3'- gCGGAC-GaGCUaGugCGGCUGCGuca -5'
28054 5' -58.3 NC_005887.1 + 10477 0.66 0.471035
Target:  5'- gGCCgGCgCGAUCACGCuCGAC-UGGUc -3'
miRNA:   3'- gCGGaCGaGCUAGUGCG-GCUGcGUCA- -5'
28054 5' -58.3 NC_005887.1 + 11123 0.68 0.34241
Target:  5'- gGCaUGUUCGAUCGCGUCGugcugaagcACGCGGc -3'
miRNA:   3'- gCGgACGAGCUAGUGCGGC---------UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 11640 0.71 0.234929
Target:  5'- uGCCgaGCUCGA-CGCGUugcaGACGCGGUa -3'
miRNA:   3'- gCGGa-CGAGCUaGUGCGg---CUGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 12601 0.71 0.253899
Target:  5'- gGCCgcgacGCUCGG-CGUGCUGACGCAGa -3'
miRNA:   3'- gCGGa----CGAGCUaGUGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 12732 0.69 0.303032
Target:  5'- aGCagaaugcGCUCGAUCGCGCCG-CGCu-- -3'
miRNA:   3'- gCGga-----CGAGCUAGUGCGGCuGCGuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.