miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 5' -58.3 NC_005887.1 + 14963 0.67 0.394354
Target:  5'- gCGCCgcaCUCGAcgccUACGCCG-CGCAGg -3'
miRNA:   3'- -GCGGac-GAGCUa---GUGCGGCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 40947 0.69 0.317573
Target:  5'- aCGCCgagcgcaUGCUCGAcCGCuUCGGCGCGGg -3'
miRNA:   3'- -GCGG-------ACGAGCUaGUGcGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 36057 0.69 0.321485
Target:  5'- gGCCUcgacgcGCUCGcgCACGCCGucgauguacagcugcACGUAGg -3'
miRNA:   3'- gCGGA------CGAGCuaGUGCGGC---------------UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 4336 0.69 0.326228
Target:  5'- uGCCgcagGaacUGAUCgACGCCGGCGCGGa -3'
miRNA:   3'- gCGGa---Cga-GCUAG-UGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 4230 0.69 0.334248
Target:  5'- gGCgUGCU-GcUCGCGCCGACGCu-- -3'
miRNA:   3'- gCGgACGAgCuAGUGCGGCUGCGuca -5'
28054 5' -58.3 NC_005887.1 + 15633 0.68 0.350716
Target:  5'- gGCCggGCUcgcCGAUCaggGCGCCGuguCGCAGa -3'
miRNA:   3'- gCGGa-CGA---GCUAG---UGCGGCu--GCGUCa -5'
28054 5' -58.3 NC_005887.1 + 14622 0.68 0.350716
Target:  5'- gCGCCgucgaggGCgCGcUCACggcaGCCGGCGCGGUg -3'
miRNA:   3'- -GCGGa------CGaGCuAGUG----CGGCUGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 27757 0.68 0.359164
Target:  5'- gGCCgaUGC-CGAgCGCGCCGGCGaGGUa -3'
miRNA:   3'- gCGG--ACGaGCUaGUGCGGCUGCgUCA- -5'
28054 5' -58.3 NC_005887.1 + 32742 0.68 0.367753
Target:  5'- gCGCggcGCUCGcgugCGCGCCGGCGCGc- -3'
miRNA:   3'- -GCGga-CGAGCua--GUGCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 22765 0.69 0.31062
Target:  5'- gGCUacaacgUGCUCGuuggcUCgACGCCGGCGCGGc -3'
miRNA:   3'- gCGG------ACGAGCu----AG-UGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 12732 0.69 0.303032
Target:  5'- aGCagaaugcGCUCGAUCGCGCCG-CGCu-- -3'
miRNA:   3'- gCGga-----CGAGCUAGUGCGGCuGCGuca -5'
28054 5' -58.3 NC_005887.1 + 28067 0.69 0.295587
Target:  5'- gCGCCacccaUGUUCGGUCACGCUGcAUGCcGUu -3'
miRNA:   3'- -GCGG-----ACGAGCUAGUGCGGC-UGCGuCA- -5'
28054 5' -58.3 NC_005887.1 + 17397 0.74 0.140845
Target:  5'- aCGCgCUGgUCGAUCACGUCGGCgGCAu- -3'
miRNA:   3'- -GCG-GACgAGCUAGUGCGGCUG-CGUca -5'
28054 5' -58.3 NC_005887.1 + 41452 0.73 0.175343
Target:  5'- uGCgCUGCUCGG-CACGCCG-CGCGa- -3'
miRNA:   3'- gCG-GACGAGCUaGUGCGGCuGCGUca -5'
28054 5' -58.3 NC_005887.1 + 30886 0.71 0.221204
Target:  5'- gCGCgaGCUCGGUCACGuuGuucggguaguuccaGCGCGGc -3'
miRNA:   3'- -GCGgaCGAGCUAGUGCggC--------------UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 27787 0.71 0.234929
Target:  5'- gCGCCaUGa-CGAcgGCGCCGACGCAGg -3'
miRNA:   3'- -GCGG-ACgaGCUagUGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 11640 0.71 0.234929
Target:  5'- uGCCgaGCUCGA-CGCGUugcaGACGCGGUa -3'
miRNA:   3'- gCGGa-CGAGCUaGUGCGg---CUGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 12601 0.71 0.253899
Target:  5'- gGCCgcgacGCUCGG-CGUGCUGACGCAGa -3'
miRNA:   3'- gCGGa----CGAGCUaGUGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 29384 0.7 0.274109
Target:  5'- uGCC--CUCGGccCAUGCCGGCGCGGUc -3'
miRNA:   3'- gCGGacGAGCUa-GUGCGGCUGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 15671 0.7 0.274109
Target:  5'- gCGCCgaGCUCGAccagcUCAcCGCCG-CGCGGc -3'
miRNA:   3'- -GCGGa-CGAGCU-----AGU-GCGGCuGCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.