miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 25153 0.73 0.103349
Target:  5'- gCGCGGCGCaacauUGCcGCGUGCGGCCg -3'
miRNA:   3'- -GCGCCGCGacu--ACGcCGCGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 2831 0.73 0.102495
Target:  5'- aGcCGGCGCcaguUGGUGCGGCGUGaacuuccaguucguCAGCCUg -3'
miRNA:   3'- gC-GCCGCG----ACUACGCCGCGU--------------GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 38634 0.73 0.092487
Target:  5'- gCGCGGauCGC-GGU-CGGCGCGCGGCUCg -3'
miRNA:   3'- -GCGCC--GCGaCUAcGCCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 7603 0.73 0.103349
Target:  5'- aGCGGCGCcGGUugaucgauggGCGGCGacuGCuGCCCg -3'
miRNA:   3'- gCGCCGCGaCUA----------CGCCGCg--UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 27239 0.73 0.092487
Target:  5'- uCGCGGCGCaacUGCaucGCGCGcCGGCCCg -3'
miRNA:   3'- -GCGCCGCGacuACGc--CGCGU-GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1492 0.73 0.103349
Target:  5'- uGCGGCGCUcgcGCGGCGC--GGCCg -3'
miRNA:   3'- gCGCCGCGAcuaCGCCGCGugUCGGg -5'
28055 5' -61.9 NC_005887.1 + 32742 0.73 0.097776
Target:  5'- gCGCGGCGCUcgcGUGCgcgccGGCGCGC-GCCa -3'
miRNA:   3'- -GCGCCGCGAc--UACG-----CCGCGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 36845 0.72 0.115404
Target:  5'- gGcCGGUGCUGcgGcCGGUGCuGCGGCCg -3'
miRNA:   3'- gC-GCCGCGACuaC-GCCGCG-UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 27653 0.72 0.115404
Target:  5'- uGUGcGCGCUGAgcUGcCGcGCGCGCGGCUUg -3'
miRNA:   3'- gCGC-CGCGACU--AC-GC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1231 0.72 0.112273
Target:  5'- gGCgGGCGCUGc-GCGGCGCuCAGCa- -3'
miRNA:   3'- gCG-CCGCGACuaCGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 15389 0.72 0.118617
Target:  5'- aCGCcGCGCUGAUcGCGcGCGgGCAGCg- -3'
miRNA:   3'- -GCGcCGCGACUA-CGC-CGCgUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 27385 0.72 0.128761
Target:  5'- gCGCGGCGUaGGcgucgaguUGCGGCGCgucguacgGCAGCgCg -3'
miRNA:   3'- -GCGCCGCGaCU--------ACGCCGCG--------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 11845 0.72 0.115404
Target:  5'- aCGCGG-GCUGAugcaguuuUGCGGUGCGCAacgcacggGCCg -3'
miRNA:   3'- -GCGCCgCGACU--------ACGCCGCGUGU--------CGGg -5'
28055 5' -61.9 NC_005887.1 + 30156 0.72 0.115087
Target:  5'- gCGCGGCGCUGuccuucGCGGUcuGCauguucuGCAGCCa -3'
miRNA:   3'- -GCGCCGCGACua----CGCCG--CG-------UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 1698 0.71 0.147464
Target:  5'- uGCGGcCGgUGAU-CGGCGCGC-GCUCg -3'
miRNA:   3'- gCGCC-GCgACUAcGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 10030 0.71 0.147464
Target:  5'- -uCGGCGUgUGGuccuacgcacUGCGGCGCGCcggcuGGCCCg -3'
miRNA:   3'- gcGCCGCG-ACU----------ACGCCGCGUG-----UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 25046 0.71 0.132318
Target:  5'- aCGCGGUGCgccGAaccgGCGuuugcGCGCGCGGCgCCg -3'
miRNA:   3'- -GCGCCGCGa--CUa---CGC-----CGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 41796 0.71 0.143535
Target:  5'- gGCGgucuucGCGCUGuauccggcGCGGCGCGCGGCggCCg -3'
miRNA:   3'- gCGC------CGCGACua------CGCCGCGUGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 26209 0.71 0.143535
Target:  5'- gGCGGCGgUGGccggccUGCagcuGGCGCACGGgUCCg -3'
miRNA:   3'- gCGCCGCgACU------ACG----CCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 11004 0.71 0.147464
Target:  5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3'
miRNA:   3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.