miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 6046 0.7 0.155616
Target:  5'- gGUGGUGCUGGUggcaGCGGCGCgGCA-CUCa -3'
miRNA:   3'- gCGCCGCGACUA----CGCCGCG-UGUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 6319 0.67 0.255331
Target:  5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3'
miRNA:   3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 7017 0.71 0.143535
Target:  5'- uCGUGGCcgGCcGccGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCG--CGaCuaCGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 7130 0.67 0.289104
Target:  5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3'
miRNA:   3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 7603 0.73 0.103349
Target:  5'- aGCGGCGCcGGUugaucgauggGCGGCGacuGCuGCCCg -3'
miRNA:   3'- gCGCCGCGaCUA----------CGCCGCg--UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 7840 0.74 0.082713
Target:  5'- uGCGGC-CUGAUG-GGCGUGCAGUaCCa -3'
miRNA:   3'- gCGCCGcGACUACgCCGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 8067 0.7 0.173153
Target:  5'- uGCGuGCGCacgucUGGUcguucacgaaaGCGcGCGCGCAGCUCg -3'
miRNA:   3'- gCGC-CGCG-----ACUA-----------CGC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 8977 0.67 0.277243
Target:  5'- gGCGGCacccuacgcagaaGCUGcUGCGcacaaGCGCgacgacguuuucucuGCAGCCCg -3'
miRNA:   3'- gCGCCG-------------CGACuACGC-----CGCG---------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 9564 0.69 0.208102
Target:  5'- aGCGGCGCgcgccGAUcCuGCGCACgAGCCg -3'
miRNA:   3'- gCGCCGCGa----CUAcGcCGCGUG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 10030 0.71 0.147464
Target:  5'- -uCGGCGUgUGGuccuacgcacUGCGGCGCGCcggcuGGCCCg -3'
miRNA:   3'- gcGCCGCG-ACU----------ACGCCGCGUG-----UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 10431 0.78 0.040711
Target:  5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3'
miRNA:   3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 11004 0.71 0.147464
Target:  5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3'
miRNA:   3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 11134 0.69 0.19446
Target:  5'- uCGCGucGUGCUGAagcacGCGGCGCccgaaaucuacgcgcGCAuGCCCg -3'
miRNA:   3'- -GCGC--CGCGACUa----CGCCGCG---------------UGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 11190 0.74 0.082482
Target:  5'- aGUGGCGCgacacgaUGGUGCaggcguauGCGCACGGCCUg -3'
miRNA:   3'- gCGCCGCG-------ACUACGc-------CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11529 0.75 0.071878
Target:  5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 11845 0.72 0.115404
Target:  5'- aCGCGG-GCUGAugcaguuuUGCGGUGCGCAacgcacggGCCg -3'
miRNA:   3'- -GCGCCgCGACU--------ACGCCGCGUGU--------CGGg -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 12628 0.69 0.197537
Target:  5'- gCGCGGCGCgUGAuccUGCGaCGCgACGGCg- -3'
miRNA:   3'- -GCGCCGCG-ACU---ACGCcGCG-UGUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.