miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 902 0.8 0.027223
Target:  5'- gCGCGGCGUgccGA-GCaGCGCAUAGCCCa -3'
miRNA:   3'- -GCGCCGCGa--CUaCGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1029 0.68 0.213566
Target:  5'- -cCGGCGUcacgaccgUGAUGCGGUGUuccuuGCCCg -3'
miRNA:   3'- gcGCCGCG--------ACUACGCCGCGugu--CGGG- -5'
28055 5' -61.9 NC_005887.1 + 1231 0.72 0.112273
Target:  5'- gGCgGGCGCUGc-GCGGCGCuCAGCa- -3'
miRNA:   3'- gCG-CCGCGACuaCGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 1417 0.66 0.296266
Target:  5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3'
miRNA:   3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1492 0.73 0.103349
Target:  5'- uGCGGCGCUcgcGCGGCGC--GGCCg -3'
miRNA:   3'- gCGCCGCGAcuaCGCCGCGugUCGGg -5'
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 1698 0.71 0.147464
Target:  5'- uGCGGcCGgUGAU-CGGCGCGC-GCUCg -3'
miRNA:   3'- gCGCC-GCgACUAcGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2204 0.78 0.038444
Target:  5'- aCGCGGCGagc--GCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCGCgacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 2472 0.68 0.236663
Target:  5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3'
miRNA:   3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2539 0.7 0.172694
Target:  5'- gCGCaaGGCGCUGucggGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- -GCG--CCGCGACua--CGCCG-------------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 2831 0.73 0.102495
Target:  5'- aGcCGGCGCcaguUGGUGCGGCGUGaacuuccaguucguCAGCCUg -3'
miRNA:   3'- gC-GCCGCG----ACUACGCCGCGU--------------GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4354 0.74 0.080428
Target:  5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3'
miRNA:   3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4624 0.68 0.236663
Target:  5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3'
miRNA:   3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5'
28055 5' -61.9 NC_005887.1 + 4684 0.66 0.311001
Target:  5'- aGaCGGCGaggguCUGAUG-GGCGCGCcgaucAGCCg -3'
miRNA:   3'- gC-GCCGC-----GACUACgCCGCGUG-----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 4755 0.66 0.326286
Target:  5'- gGCGGUGCUuuUGCGacgaGCGCGggaagcugacgcCAGCCg -3'
miRNA:   3'- gCGCCGCGAcuACGC----CGCGU------------GUCGGg -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 6040 0.67 0.27519
Target:  5'- gCGCGGCGUcGAccGCcGCGCAgauCGGCCa -3'
miRNA:   3'- -GCGCCGCGaCUa-CGcCGCGU---GUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.