miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 14156 1.11 0.000104
Target:  5'- gCGCGGCGCUGAUGCGGCGCACAGCCCg -3'
miRNA:   3'- -GCGCCGCGACUACGCCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 41597 0.8 0.027223
Target:  5'- aGCGGCgGCccaGGUGCGGCggccgGCGCGGCCCg -3'
miRNA:   3'- gCGCCG-CGa--CUACGCCG-----CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 902 0.8 0.027223
Target:  5'- gCGCGGCGUgccGA-GCaGCGCAUAGCCCa -3'
miRNA:   3'- -GCGCCGCGa--CUaCGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2204 0.78 0.038444
Target:  5'- aCGCGGCGagc--GCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCGCgacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 10431 0.78 0.040711
Target:  5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3'
miRNA:   3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 39411 0.78 0.041894
Target:  5'- uCGCGGCGgUGccGCGGCGCuugcGCAGCUUg -3'
miRNA:   3'- -GCGCCGCgACuaCGCCGCG----UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 41947 0.77 0.046968
Target:  5'- gCGCGGCGCgucuucGCGGCGCuu-GCCCg -3'
miRNA:   3'- -GCGCCGCGacua--CGCCGCGuguCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13622 0.77 0.051162
Target:  5'- gCGCGGCGC-GcgGCGGcCGCACucAGCCg -3'
miRNA:   3'- -GCGCCGCGaCuaCGCC-GCGUG--UCGGg -5'
28055 5' -61.9 NC_005887.1 + 27491 0.77 0.054158
Target:  5'- gGUGcGCGCUGuugcUGCGGUGUGCAcGCCCg -3'
miRNA:   3'- gCGC-CGCGACu---ACGCCGCGUGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 26408 0.75 0.067745
Target:  5'- uGCGGCGCgug-GcCGGCGCAucgauucCGGCCCg -3'
miRNA:   3'- gCGCCGCGacuaC-GCCGCGU-------GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 39117 0.75 0.069684
Target:  5'- aGCGGCGCggucGAaucgaacaucuucUGCGaGCGCucGCGGCCCu -3'
miRNA:   3'- gCGCCGCGa---CU-------------ACGC-CGCG--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11529 0.75 0.071878
Target:  5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 21815 0.75 0.071878
Target:  5'- cCGCGGCGCUGccG-GGCGCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -GCGCCGCGACuaCgCCGCGUG----------UCGGg -5'
28055 5' -61.9 NC_005887.1 + 4354 0.74 0.080428
Target:  5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3'
miRNA:   3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11190 0.74 0.082482
Target:  5'- aGUGGCGCgacacgaUGGUGCaggcguauGCGCACGGCCUg -3'
miRNA:   3'- gCGCCGCG-------ACUACGc-------CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 7840 0.74 0.082713
Target:  5'- uGCGGC-CUGAUG-GGCGUGCAGUaCCa -3'
miRNA:   3'- gCGCCGcGACUACgCCGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 41962 0.74 0.08506
Target:  5'- gCGUGGUGCgugcGCGGCGCGCucGCCUa -3'
miRNA:   3'- -GCGCCGCGacuaCGCCGCGUGu-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 35375 0.74 0.088453
Target:  5'- aCGCGGgccugcagcagcucaUGCUcGAUGCGcccGCGCACGGCCUu -3'
miRNA:   3'- -GCGCC---------------GCGA-CUACGC---CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28333 0.74 0.089945
Target:  5'- gGCGGCGCgccgGcgGUugcggaGGCGCGCGGCgCa -3'
miRNA:   3'- gCGCCGCGa---CuaCG------CCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 13414 0.74 0.089945
Target:  5'- gGCGGCaagccgcuGCUGAcgacgaGCGGCGCACcGCUCa -3'
miRNA:   3'- gCGCCG--------CGACUa-----CGCCGCGUGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.