miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 2539 0.7 0.172694
Target:  5'- gCGCaaGGCGCUGucggGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- -GCG--CCGCGACua--CGCCG-------------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 1492 0.73 0.103349
Target:  5'- uGCGGCGCUcgcGCGGCGC--GGCCg -3'
miRNA:   3'- gCGCCGCGAcuaCGCCGCGugUCGGg -5'
28055 5' -61.9 NC_005887.1 + 1231 0.72 0.112273
Target:  5'- gGCgGGCGCUGc-GCGGCGCuCAGCa- -3'
miRNA:   3'- gCG-CCGCGACuaCGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 27653 0.72 0.115404
Target:  5'- uGUGcGCGCUGAgcUGcCGcGCGCGCGGCUUg -3'
miRNA:   3'- gCGC-CGCGACU--AC-GC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 15389 0.72 0.118617
Target:  5'- aCGCcGCGCUGAUcGCGcGCGgGCAGCg- -3'
miRNA:   3'- -GCGcCGCGACUA-CGC-CGCgUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 26209 0.71 0.143535
Target:  5'- gGCGGCGgUGGccggccUGCagcuGGCGCACGGgUCCg -3'
miRNA:   3'- gCGCCGCgACU------ACG----CCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 11004 0.71 0.147464
Target:  5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3'
miRNA:   3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 32427 0.71 0.15149
Target:  5'- gGCGGCGaugUGGccgGCGGCgaucagguuGCGCAGCCa -3'
miRNA:   3'- gCGCCGCg--ACUa--CGCCG---------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 6046 0.7 0.155616
Target:  5'- gGUGGUGCUGGUggcaGCGGCGCgGCA-CUCa -3'
miRNA:   3'- gCGCCGCGACUA----CGCCGCG-UGUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 7603 0.73 0.103349
Target:  5'- aGCGGCGCcGGUugaucgauggGCGGCGacuGCuGCCCg -3'
miRNA:   3'- gCGCCGCGaCUA----------CGCCGCg--UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 32742 0.73 0.097776
Target:  5'- gCGCGGCGCUcgcGUGCgcgccGGCGCGC-GCCa -3'
miRNA:   3'- -GCGCCGCGAc--UACG-----CCGCGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 27239 0.73 0.092487
Target:  5'- uCGCGGCGCaacUGCaucGCGCGcCGGCCCg -3'
miRNA:   3'- -GCGCCGCGacuACGc--CGCGU-GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 10431 0.78 0.040711
Target:  5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3'
miRNA:   3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 13622 0.77 0.051162
Target:  5'- gCGCGGCGC-GcgGCGGcCGCACucAGCCg -3'
miRNA:   3'- -GCGCCGCGaCuaCGCC-GCGUG--UCGGg -5'
28055 5' -61.9 NC_005887.1 + 11529 0.75 0.071878
Target:  5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 21815 0.75 0.071878
Target:  5'- cCGCGGCGCUGccG-GGCGCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -GCGCCGCGACuaCgCCGCGUG----------UCGGg -5'
28055 5' -61.9 NC_005887.1 + 4354 0.74 0.080428
Target:  5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3'
miRNA:   3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 41962 0.74 0.08506
Target:  5'- gCGUGGUGCgugcGCGGCGCGCucGCCUa -3'
miRNA:   3'- -GCGCCGCGacuaCGCCGCGUGu-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 35375 0.74 0.088453
Target:  5'- aCGCGGgccugcagcagcucaUGCUcGAUGCGcccGCGCACGGCCUu -3'
miRNA:   3'- -GCGCC---------------GCGA-CUACGC---CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13414 0.74 0.089945
Target:  5'- gGCGGCaagccgcuGCUGAcgacgaGCGGCGCACcGCUCa -3'
miRNA:   3'- gCGCCG--------CGACUa-----CGCCGCGUGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.