miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 1417 0.66 0.296266
Target:  5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3'
miRNA:   3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30306 0.66 0.329409
Target:  5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3'
miRNA:   3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5'
28055 5' -61.9 NC_005887.1 + 11134 0.69 0.19446
Target:  5'- uCGCGucGUGCUGAagcacGCGGCGCccgaaaucuacgcgcGCAuGCCCg -3'
miRNA:   3'- -GCGC--CGCGACUa----CGCCGCG---------------UGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 29020 0.68 0.213566
Target:  5'- gCGCGGCGagauccgcGAUGCGGCcgGCGuuGCCg -3'
miRNA:   3'- -GCGCCGCga------CUACGCCG--CGUguCGGg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 27357 0.7 0.16861
Target:  5'- gGCGGCaCgccUGCGGCcuGCGCGGCCUn -3'
miRNA:   3'- gCGCCGcGacuACGCCG--CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28258 0.69 0.187442
Target:  5'- gGCGGU-CUGGU-CGGCGUACAGCg- -3'
miRNA:   3'- gCGCCGcGACUAcGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 41114 0.69 0.20276
Target:  5'- uCGC-GUGCUGA-GCGcCGCGCAGCgCCc -3'
miRNA:   3'- -GCGcCGCGACUaCGCcGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 1029 0.68 0.213566
Target:  5'- -cCGGCGUcacgaccgUGAUGCGGUGUuccuuGCCCg -3'
miRNA:   3'- gcGCCGCG--------ACUACGCCGCGugu--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.